Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00944 ATGCCACTTCATACCACCCATTATTGCCCTTGCTTACGTCTTGCCAAACACAAAGCAATAATAATTGTAATAACCAGTAACAGATGCAAGAGATTAAACCGGTTAGGCCTGCACCGTCTCGTGTTATCCAAAGCCGGGCCTAAAGTGTTCGCCGTAAAGCCCAGAAATTGGTCGGAAAAGACTCACACTTTTTTTAAACACTGCGTTAACGCCGGCAACGTGGACGCCTGTTACACTCTCGGAATGATCCGATTTTACTGTCTGGAAAACCGAGGGAGCGGACTTTCGTTGATGGCGAAGGCGGCTATGAAGCTGCACGCGCCGGCTCTATACTCGCTAGCGGTTATACAGTTCAATGGCAGCGGCGGCTCCAAACACGACAAGGATCTACGCGCGGGCGTGGCTTTGTCTGCGCGTGCGTCGCTGCTCGGGCACATCGACGCGCTTCGGGAGTTGGGTCATTGTCTCCAGGATGGCTACGGCGTGCGGCAGAACGTGGCGGAGGGGAGGCGGATGCTGGTGCAGGCCAACGTGCGGGAGCTCGCGTACTTGTTACGCGAGGTGACTCCTTCTGCTTCTGACTCTCTGATGCTGACGTGGAGGACGGCAGTGACGTGTCAGAGAGATGTCACAGCGTTGTTGAGTGACTACGGTTACAGAATTCCTGTACCGGAAGTGCAACCGGTGAATCGTTTTTTAAGAGAGTGGTTTGAATCCGGCAAAGGAAAATTAGAGGAAGGATTGAGGTTATGCTCCCACATTGGATGTGGCCGACCGGAAACTCGACCGCACGAATTTCGACGCTGTTCTGTTTGTGGGAAAGTTAATTATTGCTCACGTGGATGCCAAGCCATGGATTGGAAGTTAAAGCATAAAATGGAGTGTTCGCCCACTGAACACTATGCGGAAGGAGGTGCCGGTGTAGACCTAAATAACGAGTTTGCCATTCCAAACGATGCCGTTTGA 966 0.5197 MPLHTTHYCPCLRLAKHKAIIIVITSNRCKRLNRLGLHRLVLSKAGPKVFAVKPRNWSEKTHTFFKHCVNAGNVDACYTLGMIRFYCLENRGSGLSLMAKAAMKLHAPALYSLAVIQFNGSGGSKHDKDLRAGVALSARASLLGHIDALRELGHCLQDGYGVRQNVAEGRRMLVQANVRELAYLLREVTPSASDSLMLTWRTAVTCQRDVTALLSDYGYRIPVPEVQPVNRFLREWFESGKGKLEEGLRLCSHIGCGRPETRPHEFRRCSVCGKVNYCSRGCQAMDWKLKHKMECSPTEHYAEGGAGVDLNNEFAIPNDAV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00944 321 Pfam MYND finger 256 295 IPR002893 -
Vian4g00944 321 Gene3D Tetratricopeptide repeat domain 53 203 IPR011990 GO:0005515
Vian4g00944 321 ProSiteProfiles Zinc finger MYND-type profile. 253 295 IPR002893 -
Vian4g00944 321 Gene3D - 240 300 - -
Vian4g00944 321 SUPERFAMILY HIT/MYND zinc finger-like 249 299 - -
Vian4g00944 321 SUPERFAMILY HCP-like 59 176 - -
Vian4g00944 321 FunFam Predicted protein 243 300 - -
Vian4g00944 321 PANTHER MYND DOMAIN-CONTAINING 28 305 IPR044508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00944 Vian-Chr4 13755190 13756653 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00944 - - gmx:100820040 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00944 4 13755190 13756653 Vian4g00944 4 13755190 13756653 ECH