Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00942 ATGCTCACTCCCCTAATGCTGCTGAAATCATCTTTCACTCCCATTTTCTTGGTGCAAACCCCTAAATCCAAAGCTCAAAAACTTCACCACGCATTCACCAAAACCTTTCTCACTAACAGCACGCCACCCGTTCGACATAATGCCTCTCTCAACTTCGCCACCCCACCACCCGCTTCCTCCGCCTACATCCACCTCCCTTTCTGCCGGAAACGCTGCCACTATTGCGACTTTCCCATCGTAGCTCTCGGTTCCGCCTCCACCCAAACCCACCACGACCCGCGCGTCTCCAACTACATCGACTGGCTCTGCCGGGAAATCACCGCCACCAAAGTGGATCAGCCCGCTTCCACCACGCCCCTCCAAACTGTCTATTTTGGCGGTGGGACGCCCTCTCTGGTGCCTCCTTCCATGGTTTCATCCGTTTTGGAGAGTCTGAGGGTGAAGTTTGGGCTTTGTAAGGACGCGGAAATATCGATGGAGATGGACCCCGGCACGTTTGGTGCTGAGAAGATGAGGGAGATGATAGCGTTGGGAGTGAATAGAGTGTCTTTGGGAGTTCAGGCGTTTCAGGAGGAGCTGTTGAGAGCGTGTGGGAGGGCACATGGGGTGCAAGAGGTTCATGAGGCTATTAGTGTTGTGAAGTCATGTGGGGTTGAGAATTGGAGTATTGATCTCATAGCTTCGTTGCCTCATCAGAGTTGTGAGATGTGGGAGGAAAGTTTAAGGCTCACCATTCAGTCACAACCTTCTCATGTGTCCGTTTATGACTTGCAAATTGAGCAAGGAACAAAATTTGGACGATTGTACTCACCAGGGGAATTTCCAATGCCTTCTGAAACACAATCGGCTGAGTTCTATAAGATGGCTTCAAGAATGCTTACTGATGCGAATTACAACCATTATGAAATCAGCAGCTACTGCAAAAGTGGGTACGAGTGCAAACACAACTTTATCTACTGGAAGAACGAGCCTTTCTATGCCTTTGGCCTTGGCTCTGCCAGTTTTGTTGGTGGGTTGAGGTATTCAAGACCAAGGAAGGTCAATGATTACATTAATTTTGTGCAGAATCTGGAAAAAGGAATAGTAGATAGCTCTGGTGATGGTAACATTAATGGCAAGGACACGGCCATGGATGTGGTGATGCTGTCCCTAAGAACTGCACAAGGCCTAGACTTAAAGAGTTTCCAAGAATCATTTGGCAGCTCTGTTGTTTTGTCATTGCTAGAGGCTTATAAACCTTATGTTGAAAGTGGACTTGTGGTTTGCTTGGATGAGCATAGGAGAACCATTATAGATGACCTTGACTATTCCTTTTGGGATAAAACTAACACAGAAAAGAGGGTGGCATACATAAGGCTAAGTGATCCAGAAGGTTTCCTCTTATCAAATGAGTTGATAGCCCTTGCTTTTGGGGTTATTGACTCTTGGAAGGTTTCCCCTCAGTACCAAGAAGCAAAATCCACTTGA 1467 0.4738 MLTPLMLLKSSFTPIFLVQTPKSKAQKLHHAFTKTFLTNSTPPVRHNASLNFATPPPASSAYIHLPFCRKRCHYCDFPIVALGSASTQTHHDPRVSNYIDWLCREITATKVDQPASTTPLQTVYFGGGTPSLVPPSMVSSVLESLRVKFGLCKDAEISMEMDPGTFGAEKMREMIALGVNRVSLGVQAFQEELLRACGRAHGVQEVHEAISVVKSCGVENWSIDLIASLPHQSCEMWEESLRLTIQSQPSHVSVYDLQIEQGTKFGRLYSPGEFPMPSETQSAEFYKMASRMLTDANYNHYEISSYCKSGYECKHNFIYWKNEPFYAFGLGSASFVGGLRYSRPRKVNDYINFVQNLEKGIVDSSGDGNINGKDTAMDVVMLSLRTAQGLDLKSFQESFGSSVVLSLLEAYKPYVESGLVVCLDEHRRTIIDDLDYSFWDKTNTEKRVAYIRLSDPEGFLLSNELIALAFGVIDSWKVSPQYQEAKST 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00942 488 PANTHER COPROPORPHYRINIGEN III OXIDASE 43 475 IPR034505 -
Vian4g00942 488 SMART MiaB 58 288 IPR006638 GO:0003824|GO:0051536
Vian4g00942 488 NCBIfam radical SAM family heme chaperone HemW 60 421 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Vian4g00942 488 SFLD HemN-like, clustered with heat shock genes 59 425 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Vian4g00942 488 Pfam Radical SAM superfamily 63 243 IPR007197 GO:0003824|GO:0051536
Vian4g00942 488 SFLD anaerobic coproporphyrinogen-III oxidase like 59 425 - -
Vian4g00942 488 Gene3D tm_1862 like domain 67 292 IPR023404 -
Vian4g00942 488 SUPERFAMILY Radical SAM enzymes 49 428 - -
Vian4g00942 488 ProSiteProfiles Radical SAM core domain profile. 53 296 IPR007197 GO:0003824|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00942 - - gmx:100779022 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00942 4 13692735 13694631 Vian4g00942 4 13692735 13694631 ECH