Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00932 ATGGCGGAGAAGTTTGGAGTAGCAGCAGTAGCAGAAGAGAGCTCTAACTCCAGGGTTCCACACCATACGACAGCGAAGCTCGTCGTTTTGGCCGACCTCAACGTTGATCCTCCCGAAGCCGACGACGACGACTCTTCCCTTGTCCCTCCTCCATCGATTGCAACTTTGGCGAATGATGAAAGTGGTCAAGATAAGAGTTTGTTGTCCAAAGACACTGATAGCATTGAAGGTGAAAGTAAAAAGTTGAACAAACTGGGCAGATGTCGTTCCAGACTTAGCAAGACAGAGTCTTCTCTTGATTGTGGAGCTGATGCAGATGGTGATCAACATGTTCAAGGACCTCCTTCATCTCGGGAGGAAAAAGTTAGCAGTGTGAAGACTGGCTTGGTTCATGTTGCAAAGAAGATGCCCAAAAATGCTCATGCTCATTTTATACTTGGCCTAATGTACCAAAGATTAAGCCAGCCTCAAAAGGCTGTGTTGGCTTATGAGAAGGCAGAACAGATCTTGCTCAGGCCTGAGGCTGAGATTGATAGGCCAGAGTTGCTTTCGTTAGTTCAGATTCACCATGCACAGTGCCTGTTACTAGAAAGTTCATCAGAAAATAGTTCTGATAAAGAACTTGAGCCTCATGAACTTGAGGAGATTCTGTCTAAGCTGAAAGAGTCAGTGCAGTCAGATGTTAGACAGACAGCTGTATGGAACACACTGGGTTTTATCCTTCTTAAAACTGGTCGCGTGCAGAGTGCTATCTCAGTTTTGTCATCATTGTTGTCCATTGCACCAGAGAACTATGATTGCCTAGGAAATCTTGGGATTGCTTATCTTCAAATTGGGAATTTGGAATTATCTGCAAAATGTTTCCAGCAATTGATTTTAAAAGATCAAAATCATCCTGCAGCTTTGGTCAACTATGCTGCCCTTCTCTTGGGTAAATATGCTTCAGTTGTGGCAGGTCCGGGTGCAAGTGCCTCTGAAGGTGCCATGGCTGATCAGATCATGGCTGCAAAAGTTGCCAAGGAATGTTTGTTGGCTGCAATTAAAGCAGATAGCAAATCAGCCCATCTATGGGCAAATCTTGCCTATGCATTTTCTATTAGTGGTGATCATCGAAGTTCCAGCAAGTGCTTGGAGAAGGCTGCCAAACTGGAGCCCAATTGCATGTCTACTCGATATGCTGTTGCTATCCATCGAATAAAGGAGGCAGAAAGATCACAAGATCGCAGTGAACTGCTTTCATGTGCTGGAAATGAAATGGCTTCCATAATAAGAGATGGTGATTCATCCCTGGTCGAGATTCCAATAGCATGGGCTGGGCTTGCCATGGTTCACAAGGCTCAGCATGAGATAGTGGCAGCATATGAAAGTGAAAAGCACGGGTTGAGAGAGGTTGAAGAGCGTGCTCTTTGCAGTTTAAAGCAGGCTATAGCAGAAGATCCAAATGATGCGGTGCAGTGGCATCAACTCGGCGTTCATAGTCTCTGTGCTCGGCAATTCAAAACATCACAAAAGTACTTCAAAGCTGCTGTTGCCTGTGACAGGGATTGCAGCTATGCGTGGTCTAACCTAGGTGTCTCACTTCAACTATCAGAGGAACCATCACAAGCTGAAGAAGTATACAAGAAAGCATTGTCTTTGGCAACAACTGAACAAGCGCATGCTATATTATCCAATTTGGGAATTCTGTACCGCCATCAGAAACAATATCAACGTGCGAAGGCCATGTTTACGAAGTCACTTGAACTTCAGTCTGGGTATGCTCCTGCATTCAACAATCTGGGTCTTGTGTTTGTTGCTGAGGGTCTTTTGGAAGAAGCCAAGTATTGTTTCAACAAAGCTCTCCAATCAGATCCATTGCTAGATGCAGCTAAATCTAATATGATTAAGGCGGTTGTCATGTCAAAGTTATGCAAAGGCCTCACCTCATGCGCTCTTAAAGAGTGA 1944 0.4465 MAEKFGVAAVAEESSNSRVPHHTTAKLVVLADLNVDPPEADDDDSSLVPPPSIATLANDESGQDKSLLSKDTDSIEGESKKLNKLGRCRSRLSKTESSLDCGADADGDQHVQGPPSSREEKVSSVKTGLVHVAKKMPKNAHAHFILGLMYQRLSQPQKAVLAYEKAEQILLRPEAEIDRPELLSLVQIHHAQCLLLESSSENSSDKELEPHELEEILSKLKESVQSDVRQTAVWNTLGFILLKTGRVQSAISVLSSLLSIAPENYDCLGNLGIAYLQIGNLELSAKCFQQLILKDQNHPAALVNYAALLLGKYASVVAGPGASASEGAMADQIMAAKVAKECLLAAIKADSKSAHLWANLAYAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVAIHRIKEAERSQDRSELLSCAGNEMASIIRDGDSSLVEIPIAWAGLAMVHKAQHEIVAAYESEKHGLREVEERALCSLKQAIAEDPNDAVQWHQLGVHSLCARQFKTSQKYFKAAVACDRDCSYAWSNLGVSLQLSEEPSQAEEVYKKALSLATTEQAHAILSNLGILYRHQKQYQRAKAMFTKSLELQSGYAPAFNNLGLVFVAEGLLEEAKYCFNKALQSDPLLDAAKSNMIKAVVMSKLCKGLTSCALKE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00932 647 Pfam Tetratricopeptide repeat 519 582 - -
Vian4g00932 647 MobiDBLite consensus disorder prediction 96 124 - -
Vian4g00932 647 Gene3D Tetratricopeptide repeat domain 66 314 IPR011990 GO:0005515
Vian4g00932 647 MobiDBLite consensus disorder prediction 35 74 - -
Vian4g00932 647 Pfam Tetratricopeptide repeat 241 300 - -
Vian4g00932 647 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 24 643 - -
Vian4g00932 647 ProSiteProfiles TPR repeat profile. 517 550 IPR019734 GO:0005515
Vian4g00932 647 Gene3D Tetratricopeptide repeat domain 553 630 IPR011990 GO:0005515
Vian4g00932 647 Gene3D Tetratricopeptide repeat domain 315 421 IPR011990 GO:0005515
Vian4g00932 647 SUPERFAMILY TPR-like 466 618 IPR011990 GO:0005515
Vian4g00932 647 Gene3D Tetratricopeptide repeat domain 466 552 IPR011990 GO:0005515
Vian4g00932 647 SMART tpr_5 354 387 IPR019734 GO:0005515
Vian4g00932 647 SMART tpr_5 483 516 IPR019734 GO:0005515
Vian4g00932 647 SMART tpr_5 231 264 IPR019734 GO:0005515
Vian4g00932 647 SMART tpr_5 265 298 IPR019734 GO:0005515
Vian4g00932 647 SMART tpr_5 140 173 IPR019734 GO:0005515
Vian4g00932 647 SMART tpr_5 553 586 IPR019734 GO:0005515
Vian4g00932 647 SMART tpr_5 434 467 IPR019734 GO:0005515
Vian4g00932 647 SMART tpr_5 517 550 IPR019734 GO:0005515
Vian4g00932 647 SMART tpr_5 587 620 IPR019734 GO:0005515
Vian4g00932 647 ProSiteProfiles TPR repeat profile. 231 264 IPR019734 GO:0005515
Vian4g00932 647 ProSiteProfiles TPR repeat profile. 587 620 IPR019734 GO:0005515
Vian4g00932 647 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515
Vian4g00932 647 MobiDBLite consensus disorder prediction 1 23 - -
Vian4g00932 647 Pfam Tetratricopeptide repeat 587 618 IPR019734 GO:0005515
Vian4g00932 647 Pfam Tetratricopeptide repeat 354 387 IPR019734 GO:0005515
Vian4g00932 647 SUPERFAMILY TPR-like 136 390 IPR011990 GO:0005515
Vian4g00932 647 ProSiteProfiles TPR repeat profile. 553 586 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00932 468 619 Glycosyltransferase AT3G04240 26.144 1.71e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00932 - - gmx:100820184 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00932 4 13470480 13477319 Vian4g00932 4 13470480 13477319 ECH