Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00918 ATGTTCTTCATATCATGCAGTAAAATCATGATCACAATCCTATTTTTCTTGATTTGTGTTGGATTCAGCGATGGTGCCAATGTGAGACCGTCTGAGGGGAGAAAAGGGCAGTGGCAACTTCTCCTTAACAGCACTGGCGTGGTTGGCATGCATCTGGCTTTAACCTACAAAAACACAGTCGTAATGTTCGATCAAACTGGAGCTGGCCCTTCTCGTTACAAACTTCGCAGACGCTTCCATGGAAGCACGTGCAGCAGAAGCAGGCATGATATGATGGACTCCACATGCTATGCTCATTCTGTAGAGTATGACATTAGTACCAATAAAGTGAGGCCTCTGAGAATTGACACTGATCCTTGGTGTTCCTCTGGTTCATTCCTGAGCAATGGTACTCTTTTACAAGTAGGTGGAAATGAAAAAGGTGCCAAACGTGTCAGATTCTTTAGGCCCTGTGGGAATGACCAATGTAACTGGATACAATCAAAGAAAACACTATCTGATATGAGGTGGTATGCTTCTAGTCAGCTACTACCAGAACATGATAGGGTGGTGGTTGTTGGTGGAAGAAGAACTTTCACATATGAATTTGTGCCAAAAATTAGTCGTGGAGAAAAATCCTTTGACCTTCCATTTTTGCACCAAACCGATGACAGGAATGAAGGAGGGAACAACCTATACCCCTTTCTCCACCTTTCATCAGACGGAAACTTGTTCATTTTCGCCAACCGCGATTCCATCCTACTCAACTTGAGAAGAAACAGAGTGATCAAGACCTTCCCTCGGATTCCAGGAGAAGGGTCGAGAAACTATCCAAGCTCAGGCTCATCTGTGATACTCCCATTGGACCACAGAGACAACTTCCAAAAGGTGGAAGTTATGGTGTGTGGTGGCTCATCCACTGGAGCCTTTACAGCTGCCGCTAGGCGAAGATTCTTGGAAGGGTTAAGATCATGTGGAAGAATGGTGATCACAGGAGAGAGGAACAAGTGGAATATGGAGCACATGCCCAAGCCACGTCTCTTAAATGACATGGTGATTCTCCCTAAAGGTGACATCCTAATCATAAATGGTGCTGAACGAGGGTCTGCGGGATATGACAATGCTAGAAACGCTTCTCTTGAACCTTTTCTCTACAGCCCCAACAAAAGACTTGGAGCAAGGTTCAGAGTCCTTATGTCCACCAAGATAGCAAGAATGTATCACTCATCAGCAACTCTTCTTCCTGATGGGAGGGTCTTGGTTGCGGGTAGTAACCCTCATGGGAGGTACATTTTTCACAATGTGGCATACCCAACTGAACTAAGACTTCAAGCATTTGTTCCACACTATATGGAAAGGAGGTACCATAGCTTGAGGCCTAATAACTTGACCATAGAATATGGTGGTGCCAACCATGCAATTGAGTATGGGAAAGAGTTTAGAGTTAGGTTCTTCTTAATGAGGAGGCCTAACAATGAGATGGAGTTCAGTGCCTATGCACCACCATTTACCACTCATTCTTTTGCCATGAATCAGAGGATGCTGAAGCTGAGGTGCAGGAGCTTGCAGAGAAGTGGTGATGGGTGGGTGCTTGCAGTCTTGGAAGCCCCACCATCATCCCTTGTTGCACCTTCTGGTTACTACATGCTCACGGTTGTTAATGGTGGAATTCCAAGCATGTCTCAGTGGGTTCACTTTGGACACGCCTAA 1689 0.4541 MFFISCSKIMITILFFLICVGFSDGANVRPSEGRKGQWQLLLNSTGVVGMHLALTYKNTVVMFDQTGAGPSRYKLRRRFHGSTCSRSRHDMMDSTCYAHSVEYDISTNKVRPLRIDTDPWCSSGSFLSNGTLLQVGGNEKGAKRVRFFRPCGNDQCNWIQSKKTLSDMRWYASSQLLPEHDRVVVVGGRRTFTYEFVPKISRGEKSFDLPFLHQTDDRNEGGNNLYPFLHLSSDGNLFIFANRDSILLNLRRNRVIKTFPRIPGEGSRNYPSSGSSVILPLDHRDNFQKVEVMVCGGSSTGAFTAAARRRFLEGLRSCGRMVITGERNKWNMEHMPKPRLLNDMVILPKGDILIINGAERGSAGYDNARNASLEPFLYSPNKRLGARFRVLMSTKIARMYHSSATLLPDGRVLVAGSNPHGRYIFHNVAYPTELRLQAFVPHYMERRYHSLRPNNLTIEYGGANHAIEYGKEFRVRFFLMRRPNNEMEFSAYAPPFTTHSFAMNQRMLKLRCRSLQRSGDGWVLAVLEAPPSSLVAPSGYYMLTVVNGGIPSMSQWVHFGHA 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00918 562 CDD E_set_GO_C 448 558 IPR015202 -
Vian4g00918 562 Gene3D Immunoglobulins 456 561 IPR013783 -
Vian4g00918 562 SUPERFAMILY Galactose oxidase, central domain 101 444 IPR011043 -
Vian4g00918 562 PANTHER SECRETED PROTEIN-RELATED 26 559 - -
Vian4g00918 562 Gene3D - 32 451 IPR037293 -
Vian4g00918 562 SUPERFAMILY E set domains 450 559 IPR014756 -
Vian4g00918 562 Pfam Galactose oxidase-like, Early set domain 464 558 IPR015202 -
Vian4g00918 562 Pfam Glyoxal oxidase N-terminus 50 297 IPR009880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00918 Vian-Chr4 13073525 13075213 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00918 - - gmx:100814200 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00918 4 13073525 13075213 Vian4g00918 4 13073525 13075213 ECH