Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00917 ATGGGCGGATCAGTTTCAAAACGAAGGAGTTCTAGGCGACGTTCGTCCTCAAATTTTTTTCCTCGGTATCAATCGCCTTATTTGCCACAAAGCCAAGATCAAGGGCCTGTGAGGCATTACGGGTATTCATCTCAAAGCAATGGTGGTGGTCCTGCTCCAGAACAAGGAAAGAGATCAGATGGGAAGTATTCAAGGATAGGTGATAATTATAAGAGCCTAGACCAGGTAACTGAAGCTTTAGCAAATGCTGGCCTAGAATCTTCCAATCTCATTGTTGGTATTGATTTTACGAAGAGTAATGAGTGGACAGGTGCAAGGTCATTTCAAAGGAGATGCCTGCATTACATTGGTCATGAACAAAATCCATATGAGCAAGCTATATCTATCATTGGGAAAACTCTATCTTCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGTTTTGGAGATGCATCAACTCATGATCAAGAAGTTTTTAGTTTCCATCCTGATGAGAGATTTTGCCAAGGATTTGAAGAAGTGTTGGGACGATATAGGGAATTGGTCCCTCAGTTAAAACTTGCAGGACCAACATCATTTGCCCCAGTCATTGAGATGGCAATCACCATAGTTGAGCAAAGTGGAGGCCAATACCATGTCTTAGTGATTATAGCTGATGGCCAGGTGACGAGAAGTGTTGACACTGAGCATGGTCAGTTGAGTGCACAAGAAAAGAAAACTGTGGAAGCTATTGTGAAAGCTAGTGAATATCCCTTGTCGATCATATTAGTTGGGGTTGGAGACGGGCCATGGGATATGATGAAACAATTTGATGATAACATTCCAGCCCGAGCGTTTGATAATTTCCAGTTTGTGAATTTCACAGAAATAATGTCAAAGAACATGGATAGGTCAAGAAAGGAAACTGAGTTTGCATTGGCTGCTTTGATGGAAATACCCTCCCAGTACAAGGCTACAATAGAGCTTAATATATTGGGTACTCGAAGAGGGAAAGATATCGACAGGGTTCCTCTGCCACCGCCTCTGTACGGTGCAGCATCTTTCAGTTCCCCATCTTTCAATTCCCCAAAAACTTCCCGTCAGAACAGTTTTCGTCCCAGTGCACCATCTAGCAGACATGATGTTAGGCCGAACCCTCCCGCAACTTCTGCTTCTGATAATCAGGTTTGTCCCATTTGCCTCACCAATCCTAAAGATATGGCCTTTGGTTGCGGGCATCAGACATGCTGTGAATGCGGACAAGATCTTGAGTTATGCCCCATTTGCAGGAGCACCATCGATACTAGAATAAAACTTTACTAG 1302 0.4316 MGGSVSKRRSSRRRSSSNFFPRYQSPYLPQSQDQGPVRHYGYSSQSNGGGPAPEQGKRSDGKYSRIGDNYKSLDQVTEALANAGLESSNLIVGIDFTKSNEWTGARSFQRRCLHYIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFHPDERFCQGFEEVLGRYRELVPQLKLAGPTSFAPVIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTEHGQLSAQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMKQFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKETEFALAALMEIPSQYKATIELNILGTRRGKDIDRVPLPPPLYGAASFSSPSFNSPKTSRQNSFRPSAPSSRHDVRPNPPATSASDNQVCPICLTNPKDMAFGCGHQTCCECGQDLELCPICRSTIDTRIKLY 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00917 433 Pfam Zinc finger, C3HC4 type (RING finger) 387 428 - -
Vian4g00917 433 Pfam Copine 112 326 IPR010734 -
Vian4g00917 433 ProSiteProfiles Zinc finger RING-type profile. 390 423 IPR001841 -
Vian4g00917 433 SUPERFAMILY vWA-like 88 271 IPR036465 -
Vian4g00917 433 MobiDBLite consensus disorder prediction 1 66 - -
Vian4g00917 433 SUPERFAMILY RING/U-box 384 429 - -
Vian4g00917 433 MobiDBLite consensus disorder prediction 347 385 - -
Vian4g00917 433 PANTHER COPINE FAMILY PROTEIN 1 27 410 - -
Vian4g00917 433 MobiDBLite consensus disorder prediction 16 52 - -
Vian4g00917 433 MobiDBLite consensus disorder prediction 347 369 - -
Vian4g00917 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 433 IPR013083 -
Vian4g00917 433 SMART VWA_4 87 290 IPR002035 -
Vian4g00917 433 CDD vWA_copine_like 66 316 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00917 Vian-Chr4 13041778 13044996 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00917 K16280 - gmx:100809850 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00917 4 13041778 13044996 Vian4g00917 4 13041778 13044996 ECH