Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00887 ATGGCTCCGAGCTTAAGCAAAACAGTGCAACTAGGTTCGTTAGGTCTGGTCCCCGACAATTCACCCTTGTCCATAACCTTAAACGGCTCCAACTTCCTGGCTAACGGCCACCCTTTTCTGACGGAAGTCCCGCCCAACATAACGGCCACCCCTTCGCCCTCAGTGTATTCTAAAGCCACCGACACGGTGGTGGGTTGCTTCGTGGGGTTCCACGCGGAGGAGCCGAGGAGCCGCCACGTGGTACCTCTGGGGAAGCTGAGGGGCATAAGGTTCATGAGTTTATTCCGGTTCAAGGTGTGGTGGACCACGCACTGGGTTGGAAGCAACGGCCACGAGGTAGAACACGAAACCCAAATGATCCTTCTCGACAAGAATGACTCGCTGGGTCGTCCCTACGTCTTGCTGCTTCCCATTCTCCAAGGCTCCTTCCGAGCCTCCCTCCAACCTGGCTTAGATGACTACGTGGACCTTTGCGTCGAGAGCGGCTCCACACGTGTCACTGCCTCCAGCTTCGGGAGCTGCTTGTACCTCCACGTCGGCGATGATCCCTTTCGCTTGGTAAGTGAAGCAGCCAAAGTGGTTAGAATGCATTTGGGGACTTTCAAGCTTCTGGAGGAGAAAACCGCGCCAGCGATAATAGATAAGTTTGGATGGTGTACGTGGGACGCGTTTTACCTGAAGGTGCAACCATTAGGGGTGTGGGAAGGGGTGAAGGGCCTTGTGGAGGGAGGGTGCCCTCCGGGGATGGTCCTAATAGACGATGGGTGGCAATCAATTTGTAACGATGAGGATCCCGTGACGGACCAAGTGGGTGTGAACCGAACCTCCGCTGGGGAGCAAATGCCGTGCAGGCTCGTGAAGTTCGAGGAAAATTACAAGTTCAGGGATTATCGTAGTGTTGAAGGGTCTGAGAAAGGTTTGGGCGCGTTCGTTAGGGATTTGAAGAAGCGGTTTAGGAGCGTGGAGCATGTGTATGTTTGGCACGCGCTCTGTGGATACTGGGGTGGGGTCAGACCTGAGGTTCCGGGCATGCCCGAAGCTAAGCTTGTTACTCCGAAGCTGTCGCAGGGGTTAAAAATGACAATGGAAGATTTAGCGGTGGATAAGATCGTGAATAACGGTGTGGGACTCGTGCCACCTCACCTCGCTCACCGTTTGTACGAGGGGCTCCACTCGCGTTTGGAATCGGCGGGAATTGACGGCGTCAAAGTTGACGTTATACATCTGCTGGAAATGCTCTCAGAGGAATTCGGTGGGCGTGTTGAGTTAGCCAGAGATTATTACAAAGCACTCACTGCATCGGTGAAGAAGCATTTCAAAGGCAATGGAGTCATTGCAAGCATGGAGCACTGTAATGATTTCTTTCTCCTTGGCACCGAAACAATAGCCCTTGGTCGCGTAGGAGACGATTTCTGGTGCACTGATCCCTCTGGGGATCCAAACGGAACGTATTGGCTCCAAGGGTGCCACATGGTGCATTGTGCTTACAACAGTTTATGGATGGGAAATTTTATTCACCCAGATTGGGACATGTTTCAATCTACTCACCCATGTGCTGAATTCCATGCTGCTTCCAGAGCCATCTCTGGTGGACCCATTTACGTCAGTGATTGTGTTGGAAAGCACAACTTCAAGCTGCTCAAGAGCCTCTCTTTGCCCGATGGCACCATCTTGCGTTGCCAACATTATGCACTCCCCACAAGAGATTCTTTGTTTGAAGACCCTTTACACGATGGGAAAACAATGCTCAAAATTTGGAATCTCAACAAATATACAGGTGTGTTGGGTGTGTTTAACTGCCAAGGAGGAGGGTGGTGTCCTGTGACGCGGCGAAACAAGAGTGCCTCTGAATTCTCACACGCTGTGACATGCTGGGCGAGTCCTGAAGATATTGAATGGAGCAATGGAAAAGTTGCAGTGAGCATAAAAGGGGTGGATGTGTTTGCTGTGTATTTGTTGAAGGAGAAGAAAGTGAAGCTGATGAAATGGTCAGAGAAATTGGAAGTTTCACTGGAGCCATTTAGTTTTGAGCTGTTGACAGTGTCTCCGGTGAGAGTGTTATCAAAGGGGTTGATTAAATTTGCTCCAATTGGATTAGTGAACATGCTTAACTGTGGTGGTGCTATTGAGTGTGTGGAGTTTGATGATGAGAGAGATGTGGTGAAAATTGGAGTGAGGGGTTGTGGGGAGATGAGGGTATTGTCATCGGAGAAGCCAATTGGTTGCAAAATAGATGGAGTAGCTGTCAAATTTCAGTATGAGGATAGAATGGTGAGACTACAAGTTCCTTGGCCTACTTCTTCGAAATTCTCAATGCTTCAGTTTTTGTTTTGA 2334 0.5013 MAPSLSKTVQLGSLGLVPDNSPLSITLNGSNFLANGHPFLTEVPPNITATPSPSVYSKATDTVVGCFVGFHAEEPRSRHVVPLGKLRGIRFMSLFRFKVWWTTHWVGSNGHEVEHETQMILLDKNDSLGRPYVLLLPILQGSFRASLQPGLDDYVDLCVESGSTRVTASSFGSCLYLHVGDDPFRLVSEAAKVVRMHLGTFKLLEEKTAPAIIDKFGWCTWDAFYLKVQPLGVWEGVKGLVEGGCPPGMVLIDDGWQSICNDEDPVTDQVGVNRTSAGEQMPCRLVKFEENYKFRDYRSVEGSEKGLGAFVRDLKKRFRSVEHVYVWHALCGYWGGVRPEVPGMPEAKLVTPKLSQGLKMTMEDLAVDKIVNNGVGLVPPHLAHRLYEGLHSRLESAGIDGVKVDVIHLLEMLSEEFGGRVELARDYYKALTASVKKHFKGNGVIASMEHCNDFFLLGTETIALGRVGDDFWCTDPSGDPNGTYWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFKLLKSLSLPDGTILRCQHYALPTRDSLFEDPLHDGKTMLKIWNLNKYTGVLGVFNCQGGGWCPVTRRNKSASEFSHAVTCWASPEDIEWSNGKVAVSIKGVDVFAVYLLKEKKVKLMKWSEKLEVSLEPFSFELLTVSPVRVLSKGLIKFAPIGLVNMLNCGGAIECVEFDDERDVVKIGVRGCGEMRVLSSEKPIGCKIDGVAVKFQYEDRMVRLQVPWPTSSKFSMLQFLF 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00887 777 Pfam Raffinose synthase or seed imbibition protein Sip1 28 760 IPR008811 -
Vian4g00887 777 FunFam Probable galactinol--sucrose galactosyltransferase 5 214 553 - -
Vian4g00887 777 SUPERFAMILY (Trans)glycosidases 210 561 IPR017853 -
Vian4g00887 777 Gene3D Aldolase class I 214 552 IPR013785 -
Vian4g00887 777 PANTHER - 27 768 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00887 Vian-Chr4 12383495 12387645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00887 27 777 Glycoside Hydrolase AT5G40390 64.482 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00887 K06617 - gmx:100800308 1394.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00887 4 12383495 12387645 Vian4g00887 4 12383495 12387645 ECH