Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00872 ATGGCTTACTACGATTCTGCGCCTTCTGTCCCTCTCCTATGGAACTTCTCTCAAGTACTCGGCCAACAACTTCCCAACGAGCCTCTCCAGAACGACGACATCATAACAACCATTGCTTTCGATAAGCTCGGCGATCATCTCGCCGTTGGCGATCGAGGTGGACGCGTTGTAATATTCGGAAGAGACGATCGGAAAAAGAATGTTTCGAGTAACCGAAGGGATCTGGAGCAGCGGGGTTTCGTCTCGCAGCATCCCGAATTTCGTTACAAGACAGAATTTCAGAGCCACGAACCCGAGTTTGATTACCTAAAGAGTGTAGAAATTGAAGAGAAGATTAACAAAGTAAGGTGGTGGATGACCCACGACAGTTTGCAATTCATTCTTTCAACCAACGATAAAACAATTAAATTGTGGAAGGTTAAGGAGCATAAGGTGAAACAAGTTAAAGAAATGGCCCCTCCTTTGTGCTCAGAAAATATGCTTTTGGCGGAAAGTAGTTTCGTACCAGGGCTGGAAACCAAGTCTGCTGCTAATGGCTATCGTTTGGAATGGATAGAGAAGATGCCTCAGAATCATTTGCCGCCTCAGGACGTTGATAGCGAGATTGGTGGAATGGAAGACCCTTTTCGCGCAAAGCGCCAAAAGGTGTATGGTTATGCTCACAGTTTCAATATTAACTCCATCTCAAATAATAGTGATTATGAGACCTTTGTGTCGGCAGACGACCTTAGAATCAATTTGTGGAATCTTGAGGTCAGTGATCAGTGTTTCAACATTATTGACATGAAGCCATCAAACATGGAGGACCTTACCGAGGTCATAACATCAGCTGAATTTCATCCTTTACATTGTAACCTCCTTGCATATAGCAGCTCACAAGGTTTAATTCGTCTATCTGATTTGCGACATTCAGCAATATGTGACCATGCTTCTAGAATATTTCAACATGGAGAGAGTTATGGATCAAAGTCATTTTTCACAGAAATCACTTCTTCCATCTCAGACATAAAGTTTTTAAATGATGGCCAGCATCTTCTAAGTCGCAATTACATGAATATGAAGCTTTGGGACATGCGTAAGGAGTCATCTCCAGTCGCAATATTCAAAATTCACGAGCATCTGCGTCCTAAGTTGCCAGAGCTATATAATAACGACTGCATATTTGATAAATTTGAGTGCTGCTTTAGTGGTGATGGACTCCATTTTGCAACTGGTTCTTATAGCAATATCTTGCGAATATTCTCCCCAGGTTCTGGAAGAGAGGAAGGGATTAAACTAGAAATTAGAGGAAATTCTAATAGGAAGGCTATTCGCCAATCTAAGTCAAGGGCTAGAAGGTCTTCTCTAAGCAGCATAATGCCTCGTGGAATTTACCATCACGCCCACGTTGATTCAGAGTCTAGCAGCATTGACTCTCTTTGTAATTTAAGATCCAAGCTGCTACAAGTAGCTTGGCATCCCACATGCAATCTAGTTGCATGTGCTGTTGAAAGTAGCCTAGTCTTGTACTATGCTTAA 1518 0.4236 MAYYDSAPSVPLLWNFSQVLGQQLPNEPLQNDDIITTIAFDKLGDHLAVGDRGGRVVIFGRDDRKKNVSSNRRDLEQRGFVSQHPEFRYKTEFQSHEPEFDYLKSVEIEEKINKVRWWMTHDSLQFILSTNDKTIKLWKVKEHKVKQVKEMAPPLCSENMLLAESSFVPGLETKSAANGYRLEWIEKMPQNHLPPQDVDSEIGGMEDPFRAKRQKVYGYAHSFNINSISNNSDYETFVSADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITSAEFHPLHCNLLAYSSSQGLIRLSDLRHSAICDHASRIFQHGESYGSKSFFTEITSSISDIKFLNDGQHLLSRNYMNMKLWDMRKESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNILRIFSPGSGREEGIKLEIRGNSNRKAIRQSKSRARRSSLSSIMPRGIYHHAHVDSESSSIDSLCNLRSKLLQVAWHPTCNLVACAVESSLVLYYA 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00872 505 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 30 177 - -
Vian4g00872 505 PIRSF PPA2_B55 5 505 IPR000009 GO:0000159|GO:0019888
Vian4g00872 505 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 11 505 IPR000009 GO:0000159|GO:0019888
Vian4g00872 505 SUPERFAMILY WD40 repeat-like 29 501 IPR036322 GO:0005515
Vian4g00872 505 SMART WD40_4 99 139 IPR001680 GO:0005515
Vian4g00872 505 SMART WD40_4 22 60 IPR001680 GO:0005515
Vian4g00872 505 SMART WD40_4 466 504 IPR001680 GO:0005515
Vian4g00872 505 SMART WD40_4 253 300 IPR001680 GO:0005515
Vian4g00872 505 SMART WD40_4 319 357 IPR001680 GO:0005515
Vian4g00872 505 SMART WD40_4 210 249 IPR001680 GO:0005515
Vian4g00872 505 SMART WD40_4 361 415 IPR001680 GO:0005515
Vian4g00872 505 Gene3D - 67 504 IPR015943 GO:0005515
Vian4g00872 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 86 114 IPR000009 GO:0000159|GO:0019888
Vian4g00872 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 474 503 IPR000009 GO:0000159|GO:0019888
Vian4g00872 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 39 59 IPR000009 GO:0000159|GO:0019888
Vian4g00872 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 334 361 IPR000009 GO:0000159|GO:0019888
Vian4g00872 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 115 143 IPR000009 GO:0000159|GO:0019888
Vian4g00872 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 221 248 IPR000009 GO:0000159|GO:0019888
Vian4g00872 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 306 333 IPR000009 GO:0000159|GO:0019888
Vian4g00872 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 388 414 IPR000009 GO:0000159|GO:0019888
Vian4g00872 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 249 276 IPR000009 GO:0000159|GO:0019888
Vian4g00872 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 362 387 IPR000009 GO:0000159|GO:0019888
Vian4g00872 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 277 305 IPR000009 GO:0000159|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00872 Vian-Chr4 12099623 12109408 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00872 K04354 - gmx:100795137 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00872 4 12099623 12109408 Vian4g00872 4 12099623 12109408 ECH