Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00867 ATGGGTTCTTTGATGAGTTCACCGAAAAAGAAAGAACAGATGGAAGCAGCGTTGAATAAGGCTAAGGGGATAGTATCCTCTTCCCCTGTTGTTGTCTTTAGCAAGACTTACTGTGGTTATTGCAAGCGGGTCAAAGATCTCTTCCTACAGCTTGGAGCATCCTACAAGGTTTTTGAATTGGACACAGAAATCTATTTTCAAGTTAAGTCTTTCACGTGTTTTCGTGTTTTTATACTTCATCGTCTTTCACTCGTGTCTACATACTCCATTGACTTTCTCGTGTCTGCATACTCCATTGACTTTCTCGTGTCTGCATACTCCATTGACTTTCTCGTGTCTGCATACTCCATCGACTTTCTCGTGTCTGCATACTCTATCGACTCTCTCGTGTCTGCATACTCCATCGACTCTCTCGTGTCTGCATACTCCATCGACTCTCTCGTGTCTGCATACTCCATCGACTCTCTCGTGTCTGCATACTCCATCGACTCTCTCGTGTCTGCATACTCCATCGACTCTCTCGTGTCTGCATACTCCATCGACTCTCTCGTGTCTGCATACTCCATCGACTCTCTCTATCTCGTGTCTGCATACTCCATCGACTCTCTCTATCTCGTGTCTGCATACTCCATCGACTCTCTCTATCTCGTGTCTGCATACTCCATCGACTCTCTCTATCTCGTGTCTGCATACTCCATCGACTCTCTCTATCTCGTGTCTGCATACTCCATCGACTCTCTCTATCTCGTGTCTGCATACTCCATCGACTCTCTCTATCTCGTGTCTGCATACTCCATCGACTCTCTCTATCTCGTGTCTGCATACTCCATCGACTCTCTCTATCTCGTGACAGTGCCTAACGTGTTTATTGGAGGAAAGCACATTGGTGGTTGTGATAGTAAGGCCCTGCACACGACTGTTTTGGAGAAACACAAAACAGAACAACTAGTTCCTCTTCTGAATGATGCTGGGGCGATTGCCAATAACTCTGCTCAACTATGGACAGAATTCTACAGAAGCATGTTTTGGTTAGCTGTGATCTGTGGTGGTTTAATGGTTCTGCATGCTTTTCTCCTCATTGTCCTGAAATTTGGGAAGAGAAATTCTGAGAAGCATACAATCCATGGAGCACTCACATTCCCAAGATTTGAGATATTTCTTATATTTCTTGCACTACCGAATATTTGCAAGTCCTCTGCTGTCCTAATTCAAGCTAAATTACCGTTTCAAGTTTTGTTCTGCTCCGAAACCCAGCGCCAGCAAGCAGCAGCAAAATTCAACATCTCGAAAAGGAAAGAACAGATGGAAGCAGCGTTGAATAAGGCTAAGGGGATAGTATCCTCTTTCCCTGTTGTTGTCTTCAGCAAGACTAACTGTGGTTATTGCAAGCGGGTCAAAGATCTCTTCCAACAGCTTGGAGCAACCTACAAGGTTGTTGAATTGGACATAGAAAGAGATGGAAATTATATTCATTCAGCTTTAATCGAGTGGACGGGACTTAGGACTGTGCCTAACGTGTTTATTGGAGGAAAGCACATTGGTGGTTATGCTGTTTGGGAGAAACACAAAACAGAACAACTGGTTCATCTTCTGAATGATGCTGGGGCGATTGTCAATAACTCTGCTCAACTGTAA 1635 0.4428 MGSLMSSPKKKEQMEAALNKAKGIVSSSPVVVFSKTYCGYCKRVKDLFLQLGASYKVFELDTEIYFQVKSFTCFRVFILHRLSLVSTYSIDFLVSAYSIDFLVSAYSIDFLVSAYSIDFLVSAYSIDSLVSAYSIDSLVSAYSIDSLVSAYSIDSLVSAYSIDSLVSAYSIDSLVSAYSIDSLVSAYSIDSLYLVSAYSIDSLYLVSAYSIDSLYLVSAYSIDSLYLVSAYSIDSLYLVSAYSIDSLYLVSAYSIDSLYLVSAYSIDSLYLVSAYSIDSLYLVTVPNVFIGGKHIGGCDSKALHTTVLEKHKTEQLVPLLNDAGAIANNSAQLWTEFYRSMFWLAVICGGLMVLHAFLLIVLKFGKRNSEKHTIHGALTFPRFEIFLIFLALPNICKSSAVLIQAKLPFQVLFCSETQRQQAAAKFNISKRKEQMEAALNKAKGIVSSFPVVVFSKTNCGYCKRVKDLFQQLGATYKVVELDIERDGNYIHSALIEWTGLRTVPNVFIGGKHIGGYAVWEKHKTEQLVHLLNDAGAIVNNSAQL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00867 544 ProSiteProfiles Glutaredoxin domain profile. 18 122 - -
Vian4g00867 544 ProSiteProfiles Glutaredoxin domain profile. 439 538 - -
Vian4g00867 544 SUPERFAMILY Thioredoxin-like 283 326 IPR036249 -
Vian4g00867 544 Gene3D Glutaredoxin 9 72 - -
Vian4g00867 544 Gene3D Glutaredoxin 275 333 - -
Vian4g00867 544 Gene3D Glutaredoxin 430 544 - -
Vian4g00867 544 ProSitePatterns Thioredoxin family active site. 30 48 IPR017937 -
Vian4g00867 544 ProSitePatterns Thioredoxin family active site. 451 469 IPR017937 -
Vian4g00867 544 PANTHER GLUTAREDOXIN 2 9 63 - -
Vian4g00867 544 SUPERFAMILY Thioredoxin-like 440 537 IPR036249 -
Vian4g00867 544 SUPERFAMILY Thioredoxin-like 19 60 IPR036249 -
Vian4g00867 544 PRINTS Glutaredoxin signature 510 523 IPR014025 -
Vian4g00867 544 PRINTS Glutaredoxin signature 496 509 IPR014025 -
Vian4g00867 544 PRINTS Glutaredoxin signature 451 469 IPR014025 -
Vian4g00867 544 FunFam Glutaredoxin 2 436 544 - -
Vian4g00867 544 CDD GRX_GRXh_1_2_like 450 515 - -
Vian4g00867 544 Pfam Glutaredoxin 451 513 IPR002109 -
Vian4g00867 544 Pfam Glutaredoxin 30 63 IPR002109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00867 Vian-Chr4 12026328 12033128 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00867 445 537 Miscellaneous Gene Families AT4G15700 39.362 7.96e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00867 K03676 - qsu:111991481 163.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00867 4 12026328 12033128 Vian4g00867 4 12026328 12033128 ECH