Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00862 ATGAATGTGCGCGGCGAACTCAGTTCTCCGGATCCGTTGGATTCGTTTCCTCCGTTGCGGGTTCGGGAATCGGACGGTGCCTCGGACGATTCCGAGTTCGAGCGGTATTGCAGCGCCAACTCGGTGATGGGAACGCCCAGCACCAGCATGAGCATGTGCAGCGCTGTCACGCTCTTTCACGATTTCTCCGATTGCGATTTCGCCTCTTCGGCGGATGGTTTCGAGAGTTTCAGTTTGGGAAAGGGAACGACGGAGGCTAATTGCGCCGGCAACCGGCGACGGAGTCTGCGGTACGGTTCCAGTGGATTGGAGCTCTACGGTGATTGCAGTGAGGAGCTCGCTTTGACTGCGCTCGATTCCTCGGAGTTGATTGGGTTTAACCGGATCGAAGAGCCGAATGGGAACGGTGAAGTGAGTGCTGGAGAAGGTGGTGTAAATGGTTTTGAATTTCAAATTGATAAAAGAGAAGAGGAAGAAGAAGAAGAAGAAGAATTGGAAGAGTTATCGGAGGGTGATGATTCTATGTATAATTATGACAGTGATGGTAATGGTGACGGTGGAAAGGAAATTTATTTGACGGAAAACATTGGTTATTGTGAAGAGAGGGAAGTGAGAAACGAGAACTCTTTGTTTATGAACACTTCAGTGGCCTATGGTTCGCGAGACTTGGATGATTTTTTGATGCAAAACGGTCCCGTTTCTGTCATGTCTGATCTATTTCACAGTCAGCGAAAAAAGAATGATACATTGAATCCGGGTTCTGGTCAAAAGGAGCAAGGGAAAAATGTAAAGGACATGGTTATAGTCAATGAAGTTGAAGAAACTAAAGATATAGGTTATTCTGATGCCGCAGAAAAGGTTAAGGACAGGGAAGTTGTTATGCCTGCTTACTTAGAGGAAAGTTCTGCACCAATCAATTCTCCGAGCAGTGTCAAGATGCCGATCCGAGGTTCTGGTGATTTGGTTAGCTGTCCTGAAGTTTCTTCTGTTACCGAGGTGGATGAAGTTCATTTGGATCTTCCGGAGAAAAAAGCTCCTCGGAATATGGGTTTGGGTGTTAATGGTTGTGGTAGCATGGAGAAAGGAAATGTCAACAGTGAAGAAGCTATTGCAGGTAGTGACGCTCCTGGTGTAAAGTCGGAGCTGGATGATTCTATGTTTAGGCTTGATCACATCAGTGATGATAGCCAATTTCATAAGAGTTCTTCCAATCCATCCAGCCATCTTGAGAACGTTATTGCAAAATCATTTGAGTGTGTTGAACCAATTACGCAGCTGTCAGACAGTGGAATGAGGAAATTATTAGAGAGTTCACCCACTTCAACAAATCTCTTAGAGAAAAGTCCTGTGGTGTCTAAGACAGAAGACTTTGAGCTAAATGAATTTTATGACGAGGTTGTTCAGGAAATGGAAGAAATTTTACTCGAATCTATGGATTCTCCTGGTTCTAGGCTTTCCATGGGTAACAGATTGGTTGAGCCTCAATTTTCTATGCCTTCAAGAGATGGTGGGTTGACTGCTTCTACTTCTAGCACAGATGATGCTTACCTGCTAGTTCAACGCCCAAGAAGAATAGATAGGATTGAAGTGGTAGGTGCGAGGCAGAAGAAAGGGGATGTTTCTTTTAGTGAAAGATTGGTTGGAGTGAAGGAATACACTGTGTATATAATTAAAGTGTGGAGTGGCAAGGACCAGTGGGAGGTTGAAAGGCGATATCGTGATTTCTTCATTCTTTATCGTTGCATGAAAACATTATTCAATGAGCAAGGCTGGAAATTACCTTTGCCATGGTCTTCTGTTGAAAAGGAAACCCAGATATTTAGAAGTGCATCTCCTGATATTATTGTGAAAAGGAGTGTTCTTATTCAAGAGTGTTTACAGTCTATTATCCATTCCAGGTTCTCTCCTCCTATAGCATTGACATGGTTTTTGTCCCATCAAGAATCGTATCCTATTTCACCCGTGTCAAATGTACCGGTTTCTCAGTCTTCTTTTACAGGATGGCAAAATTTTCGAAACATTTCCAATTTAGGAAAGACAATTTCACTCATTGTTGAAATTCCACCAAACAAATCTATCAAACAGTTGTTAGAAGCACAGCATCACACCTGTGCTGGATGCCATAAACATTTTGATAATGGAAGAACTTTGATTTGGGATTTTGTACAAACATTTGGATGGGGGAAGCCTCGACTCTGTGAATACACTGGCCAGTTGTTTTGTTCTTCTTGCCACACAAATGAGACTGCAGTCTTGCCAGCCAGAGTTTTACATCGCTGGGATTTTACGCATTATCATGTTTCTCAGCTGGCAAAATCCTATCTAGATTCGATATATGAACAGCCCATGCTCTGTGTCACTGCAGTTAATCCCTTCCTCTTGTCAAAGGTCCCAGCCCTGCTTCATATTATGAGTATCAGAAAAAAGATAGGTATAATGCTTCCATACGTTCGCTGCCCATTTCGGAGGGCCATTAACAGAGGACTTGGAAACAGGAGATATCTTCTCGAAAGCAATGACTTTTTTGCTCTTAGAGATTTGATTGATCTTTCCAGAGGAGTCTTTGCTGCACTTCCTGTGATGGTGGAAACTGTGTCAAGGAAAATCCTGGAACACATTACTGACCAATGCCTTGTATGTTGTGATGTGGGAGACCCCTGCAATGCCCGACAAGATTGCAGTGACCCATCTTCTCTCATTTTCCCATTTCAGGAAGACGAGATTGAAAGGTGCAAAGCTTGCCAGTTGGTTTTCCATAAGCGTTGCTTTAGAAAACTTGGAAATTGTCCCTGTGGTGCTCAACTCAGATTGAACGAGACAAGAAGCTTTATTAACAGAGCAAGCCAAAGGGGTGTTGGTGGTGAAACAAGAGGAGCTTTGGACTTATTAGGCAGAGGACTGACTTCTGGGTTGTCACAAAGGTTCCTATCTGGATTTTTTACAACAGAAAAACCAGACAAGACTAAGGACCATAAAGACGAAAATATTATTTTAATGGGCTCCTTACCAACCACTTCTTTATGA 3024 0.4315 MNVRGELSSPDPLDSFPPLRVRESDGASDDSEFERYCSANSVMGTPSTSMSMCSAVTLFHDFSDCDFASSADGFESFSLGKGTTEANCAGNRRRSLRYGSSGLELYGDCSEELALTALDSSELIGFNRIEEPNGNGEVSAGEGGVNGFEFQIDKREEEEEEEEELEELSEGDDSMYNYDSDGNGDGGKEIYLTENIGYCEEREVRNENSLFMNTSVAYGSRDLDDFLMQNGPVSVMSDLFHSQRKKNDTLNPGSGQKEQGKNVKDMVIVNEVEETKDIGYSDAAEKVKDREVVMPAYLEESSAPINSPSSVKMPIRGSGDLVSCPEVSSVTEVDEVHLDLPEKKAPRNMGLGVNGCGSMEKGNVNSEEAIAGSDAPGVKSELDDSMFRLDHISDDSQFHKSSSNPSSHLENVIAKSFECVEPITQLSDSGMRKLLESSPTSTNLLEKSPVVSKTEDFELNEFYDEVVQEMEEILLESMDSPGSRLSMGNRLVEPQFSMPSRDGGLTASTSSTDDAYLLVQRPRRIDRIEVVGARQKKGDVSFSERLVGVKEYTVYIIKVWSGKDQWEVERRYRDFFILYRCMKTLFNEQGWKLPLPWSSVEKETQIFRSASPDIIVKRSVLIQECLQSIIHSRFSPPIALTWFLSHQESYPISPVSNVPVSQSSFTGWQNFRNISNLGKTISLIVEIPPNKSIKQLLEAQHHTCAGCHKHFDNGRTLIWDFVQTFGWGKPRLCEYTGQLFCSSCHTNETAVLPARVLHRWDFTHYHVSQLAKSYLDSIYEQPMLCVTAVNPFLLSKVPALLHIMSIRKKIGIMLPYVRCPFRRAINRGLGNRRYLLESNDFFALRDLIDLSRGVFAALPVMVETVSRKILEHITDQCLVCCDVGDPCNARQDCSDPSSLIFPFQEDEIERCKACQLVFHKRCFRKLGNCPCGAQLRLNETRSFINRASQRGVGGETRGALDLLGRGLTSGLSQRFLSGFFTTEKPDKTKDHKDENIILMGSLPTTSL 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00862 1007 ProSiteProfiles PX domain profile. 533 651 IPR001683 GO:0035091
Vian4g00862 1007 SMART DUF4206_2 731 938 IPR025258 -
Vian4g00862 1007 Pfam Putative zinc-RING and/or ribbon 731 934 IPR025258 -
Vian4g00862 1007 MobiDBLite consensus disorder prediction 1 32 - -
Vian4g00862 1007 PANTHER PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN 29 941 - -
Vian4g00862 1007 Gene3D - 540 650 IPR036871 GO:0035091
Vian4g00862 1007 Coils Coil 148 171 - -
Vian4g00862 1007 MobiDBLite consensus disorder prediction 154 174 - -
Vian4g00862 1007 SUPERFAMILY PX domain 545 647 IPR036871 GO:0035091
Vian4g00862 1007 Pfam PX domain 560 634 IPR001683 GO:0035091
Vian4g00862 1007 MobiDBLite consensus disorder prediction 154 187 - -
Vian4g00862 1007 MobiDBLite consensus disorder prediction 243 262 - -
Vian4g00862 1007 CDD PX_domain 540 631 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00862 - - vra:106762619 1905.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00862 4 11965582 11971259 Vian4g00862 4 11965582 11971259 ECH