Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00842 ATGAACGCCCACTTCTTCTGCTGCTTCTTCTTGTCGCTCTCATCTTTCCATGTTTCTCTAGCAACCCGCGAACGCATAAACCCATTCAGCCCCAAAGCCTCCCTCATTCGCTATTGGAACACTCGAGTCACCAATAGGCCTCCAATCCCTCACTTTCTTCTGGCTAAAGCTTCACCTCTTACCCCACAACACTATGCTATTCTCAACAAACTTTTAAACGAAAAACCCAAACTCTACATTCCCAAGCTTCACCAATCCCTCTGTTCCTCACCCAACTTATTCTGTTCCTTCGACGATGCATCAAACACGCACAGACTCCAGCGCAAAAACGACGACGCCAACTTCGCCGTTTACAACAACAAACACTTCGCTAACTACGGCTCCTCTAAAGTCGACGGAGTCGACTCCTTCAAAAACTACTCCAACGGCCTAAACGCGAACAACGACGCCTTTCGGAGATACAGCGACTCCTCGACGCGCCGCGCCGAACAGTTCAAGAACTACGCCGATAACGGTAACGTTGCGAATACGAACTTCACCAGCTACGGTTCCGCCGCTGCTCAATCCTCCAGCGACTTCAACAACTACGATAAAACGGTGAACGTTCCCAACCTCGGTTTCACCACCTACGACTCCGGCTCCTCCAACCACAAACTGTCGTTCGCCAGCTACGGCAACGAAACAAATTCCGGATCGCAATCCTTCTCGAGCTACGGAAAACGCGTCATTGGCGGAACCAGCGAGTTCACGAATTACGCTAGCGACGCGAACATTCTGCAATCGCATTTCAACAATTACGGCGACTTCAGCGCCGGTGCAGCCAACGACTCCTTCAAGTCCTACAGCTTCAACGGTAACAATCCGCGGAACGATTTTAAAACGTACGGAGCCGGATCGACAGGATCCGCCAACGAAAATTTCATCAGTTACCGGAACCGCGCCAATGTCGGCGACGACTCGTTCCAAAGCTACGCCGCGAGGTCGAAGTCCGGCACCGCCACATTCGCGAACTACGGCATGTCGTTCAACGTAGGAAACGACAGTTTCGCGGAGTACGGAAAGGGCGCGACGGGGAAGAGCTCGTTCGGGTTTAAATCTTACGGGTTGGGCCGCGGGTTTAAAGTGTACAACAAAGACGGCGCGTCATTTTCGGGGTATCGTAATTTCAGCGCAACAAGTGGCAGAGTTGTAAATAAGCGGGTGGAGCAGGGTAAGTTCTTTAGAGAATCGATGATGAAAGAAGGGAACGTGATTTTAATGCCTGACATTAGGGATAAAATGCCTGCAAGGTCGTTTTTGCCCCTAACGATTGCTTCGAAATTACCGTTCTCGTCGGCGAGGATCGACGAAATGAGGGTATTGTTCGACGTGCGGGAGGGGTCTTTTACAGAGCGCGTGATAGTTAACGCGTTGGGTGAGTGCGAGAGGGAGCCGAGCAGGGGTGAGACGAAACGGTGTATCGCGTCTGCAGAGGAAATGATAGAGTTTGCGGCATCGGTGGTGGGTCCCAGTGCTGTGGTGAGGACCACGGAGAATGTGAACGGTTCAGGATCGAGTGTGATGATTGGTAAGGTCTACCCAGTGGAGGGTGGAAAAGTAACGAAATCAGTTTCGTGTCATCAGAGTTTGTACCCTTACTTGCTGTATTATTGCCACAGTGTACCTCGAGTGAGAGTTTATGAAGCTGATATTCTTAACGTGGAGACCATGGAGAAGATGAATCACGGTGTTGCCATCTGTCACCTTGACACGTCAGCGTGGGGCCCAGAACACGGGGCATTCTTGGCACTGGGATCAGGCCCTGGGAAAATTGAGGTGTGCCACTGGATTTTCGAGAACGACATGACGTGGACCACTTGA 1860 0.5129 MNAHFFCCFFLSLSSFHVSLATRERINPFSPKASLIRYWNTRVTNRPPIPHFLLAKASPLTPQHYAILNKLLNEKPKLYIPKLHQSLCSSPNLFCSFDDASNTHRLQRKNDDANFAVYNNKHFANYGSSKVDGVDSFKNYSNGLNANNDAFRRYSDSSTRRAEQFKNYADNGNVANTNFTSYGSAAAQSSSDFNNYDKTVNVPNLGFTTYDSGSSNHKLSFASYGNETNSGSQSFSSYGKRVIGGTSEFTNYASDANILQSHFNNYGDFSAGAANDSFKSYSFNGNNPRNDFKTYGAGSTGSANENFISYRNRANVGDDSFQSYAARSKSGTATFANYGMSFNVGNDSFAEYGKGATGKSSFGFKSYGLGRGFKVYNKDGASFSGYRNFSATSGRVVNKRVEQGKFFRESMMKEGNVILMPDIRDKMPARSFLPLTIASKLPFSSARIDEMRVLFDVREGSFTERVIVNALGECEREPSRGETKRCIASAEEMIEFAASVVGPSAVVRTTENVNGSGSSVMIGKVYPVEGGKVTKSVSCHQSLYPYLLYYCHSVPRVRVYEADILNVETMEKMNHGVAICHLDTSAWGPEHGAFLALGSGPGKIEVCHWIFENDMTWTT 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00842 619 ProSiteProfiles BURP domain profile. 406 619 IPR004873 -
Vian4g00842 619 Pfam BURP domain 406 618 IPR004873 -
Vian4g00842 619 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 11 618 - -
Vian4g00842 619 SMART BURP_2 404 619 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00842 Vian-Chr4 11278532 11280515 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00842 - - gmx:100784264 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00842 4 11278532 11280515 Vian4g00842 4 11278532 11280515 ECH