Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00619 ATGGTTGGAAATTGTGGTGATCTAGTGGCATTTTCTTTTGTCTTCTTGACCGTGGTTTCCGGTGGGTCTGCATGGGTTGGCGTGAACTGGGGAACCATGGCAACGCACCAAATTCCCCCCGAGAAGGTGGTGAAGATGCTCAAGGAAAATGGGTTCACCAAATTGAAGCTCTTTGATGCGGATGAACTCATTATGGCAGCTCTTATGGGGACCGATATCCAAGTCATGCTCGCAATACCCAACAACATGCTGGAAAAGATAAGTAACACTCCTAAAGCCGCAGATCATTGGGTCTATGAAAATGTCACCTCTTACTTCTTCAATGGTGGCGTCAAAATCAAGTATGTTGCTGTGGGTAATGAGCCTTTCCTTAAAGCATATAATGGTACCTTTGCGAAGAAAACGCTGCCAGCCCTGAAGAATATACAGACATCACTTAATAAAGCCGGGTTGAGTTCAAAGGTCAAAATCACTGTTCCATTCAATGCTGATATTTACTATTCACCTGATTCAAATCCAGTTCCATCAGCTGGTGACTTCAGGCCTGAAATGAGAGACCTCACCATTGAGATAATCCAGTTCTTGTATGCAAACAATGCACCTTTTACAGTTAATATCTACCCTTTCCTTAGTCTTTATTTCAACGAAAATTTCCCTTTGGATTTTGCATTTTTTGATGGAAAAAGCAAGCCTCTCAGGGACGGTAAGGCACTTTACACCAATGTGTTTGATGCAAATCTTGATACTCTTCTGTGGGCTTTAGACAAGGCAGGGTATCCTGACATGGAGGTATTGATTGGGGAAATTGGGTGGCCAACAGATGGTGATAAGAATGCTAATGCCAAGAGTGCAAGGAGGTTCAACTTTGGTTTGCTTAAACATGCTCTGAGTGGAAAGGGTACCCCTAAAAGGAAAGGAACAATTGACTTGTACCTGTTCAGCCTCATTGATGAGAACATCAAAAGTGTTGCTCCTGGGAACTTTGAGAGGCATTGGGGGGTTTTTGAGTTTGATGGGAAGCCAAAGTATGAATTAGACTTAACAGGTCAGCACAAGGAAAAAGGTCTTATCCCTGTGGAAGGTATAAAGTACCTGCAAAAGAGGTGGTGTATTTTGAATCCAGATGTTACTGACTTTGATGGTTTGGCTGGTAGCATTGACTATGCCTGTACCTTTTCTGATTGTACTTCCCTTGGTTATGGCTCTTCTTGTAATTATCTTAGTCTCCAAGGGAATGCATCTTATGCTTTCAATATGTATTATCAAGTAAATAACCAACAGGGTTGGAGCTGTGATTTCTCTAGTTTGGCTACCATAACACAGAAGGATCCATCACAGAGTGGCTGCCAATTTCCCGTGATGATAGCTAGCAGTTCATCTTTGCTGCTGCTGCTGCATGAAGGACTTTTATGTATCCTAAAGAAAGCATTGGAGGTTTATATTTTCGTTATGATTTTGTTTTAG 1464 0.4201 MVGNCGDLVAFSFVFLTVVSGGSAWVGVNWGTMATHQIPPEKVVKMLKENGFTKLKLFDADELIMAALMGTDIQVMLAIPNNMLEKISNTPKAADHWVYENVTSYFFNGGVKIKYVAVGNEPFLKAYNGTFAKKTLPALKNIQTSLNKAGLSSKVKITVPFNADIYYSPDSNPVPSAGDFRPEMRDLTIEIIQFLYANNAPFTVNIYPFLSLYFNENFPLDFAFFDGKSKPLRDGKALYTNVFDANLDTLLWALDKAGYPDMEVLIGEIGWPTDGDKNANAKSARRFNFGLLKHALSGKGTPKRKGTIDLYLFSLIDENIKSVAPGNFERHWGVFEFDGKPKYELDLTGQHKEKGLIPVEGIKYLQKRWCILNPDVTDFDGLAGSIDYACTFSDCTSLGYGSSCNYLSLQGNASYAFNMYYQVNNQQGWSCDFSSLATITQKDPSQSGCQFPVMIASSSSLLLLLHEGLLCILKKALEVYIFVMILF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00619 487 FunFam Glucan endo-1,3-beta-glucosidase 5 25 353 - -
Vian4g00619 487 Gene3D Glycosidases 25 355 - -
Vian4g00619 487 Gene3D - 364 459 - -
Vian4g00619 487 Pfam X8 domain 369 438 IPR012946 -
Vian4g00619 487 FunFam Glucan endo-1,3-beta-glucosidase 8 364 460 - -
Vian4g00619 487 ProSitePatterns Glycosyl hydrolases family 17 signature. 262 275 IPR000490 GO:0004553|GO:0005975
Vian4g00619 487 SUPERFAMILY (Trans)glycosidases 26 345 IPR017853 -
Vian4g00619 487 Pfam Glycosyl hydrolases family 17 26 346 IPR000490 GO:0004553|GO:0005975
Vian4g00619 487 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 17 440 IPR044965 GO:0004553|GO:0005975
Vian4g00619 487 SMART X8_cls 368 451 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00619 Vian-Chr4 7484716 7486757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00619 8 455 Miscellaneous Gene Families AT2G19440 57.812 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00619 - - gmx:100781894 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00619 4 7484716 7486757 Vian4g00619 4 7484716 7486757 ECH