Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00612 ATGGTGAAACGTGAGACAGTGATGGAGCATGAGGAGCCTAATGCAGAAGCCACAGCAGATATATTCCCTGCAGATGATGCGTATGCCATGTTCTTGGGGGTGGGAACACCAGTGCAAATTGTCTTCCTTATGATTGACACAGGGAGCCCCATCACGTGGTTCCAGTGCGGCCCCTGCACCCACTGCTACCCCATGCGCCGCCCTCTCTTCAACTCACCTGCATCAACCTCCTTCAGACAACTTGGCTGCTACGACGACACGTGTCTCATTCCAATGATGAGGGGTATTTTTGGAAACTGCAAAGGATTGAGTTGTAGATACAATGTAGAATATGACATGAAATCTCAATCTCGTTCCTTTGGTGTCATGGTTACTGACACCCTTAACTTTGAGCACTCCAATGTTGAAGTCAAGGACTTCGTAATGGGGTGTGGGAACTCTTTTGAGGGTCCCTTTAGGACTCAGTTTTCGGGAGTTTTAGGTCTCGGACGAGGTCCACTTTCAATGCAAAGTCAGCTTCATTCGAAGGCCTTTTCCTTTTTCTTAGTGAGTCTTGGATCGGAGAAACCTTCCTCTCTTGAGTTTTATGAGACATTACCCAAACAACATGGTAACACTAACAAATCCATTATGGTTCCCTTGAGAGAGAACAGTAGATACCCTTTCTATTACTTTGTGCAGTTTGTGGGAATAGGCATTAACGGGTTCATGTTGGATATTCCATCTAGAGTTTGGGGTTATGGCTTGAACTACGATGGTGGGGTTATTATAGACACGGGAAAAGTGCTAACCTATTTGCCTAGTGAAGCGTACAATATATTCAGGTCAGAGATACTGAGAACAGATGGTAACTTTACAAAGAAGAAAGGGTACAAGGAGTTAGAGTTTTGTTACATAGAAAGTCCTACCAATGTGTATCCAACAGTTGAATTTTACTTTGAAAATGGTAACATTGCGGGTGAAAATTTCGTGTCCTTCAAATTGAACAACCGTCAATTACTCATCACACCACATGAGGGAATAGTTTGTCTATCGTTTGCAGAAGCAAAAAATTCTGCACTTACTGTTATTGGCACCAACCATCTCCAAGGAACTCTGTTAACGTATAATTTGGTTGATGATATTATTATCTTCACATGTAATAAATGTTAG 1152 0.4262 MVKRETVMEHEEPNAEATADIFPADDAYAMFLGVGTPVQIVFLMIDTGSPITWFQCGPCTHCYPMRRPLFNSPASTSFRQLGCYDDTCLIPMMRGIFGNCKGLSCRYNVEYDMKSQSRSFGVMVTDTLNFEHSNVEVKDFVMGCGNSFEGPFRTQFSGVLGLGRGPLSMQSQLHSKAFSFFLVSLGSEKPSSLEFYETLPKQHGNTNKSIMVPLRENSRYPFYYFVQFVGIGINGFMLDIPSRVWGYGLNYDGGVIIDTGKVLTYLPSEAYNIFRSEILRTDGNFTKKKGYKELEFCYIESPTNVYPTVEFYFENGNIAGENFVSFKLNNRQLLITPHEGIVCLSFAEAKNSALTVIGTNHLQGTLLTYNLVDDIIIFTCNKC 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00612 383 Pfam Xylanase inhibitor N-terminal 28 193 IPR032861 -
Vian4g00612 383 Gene3D Acid Proteases 196 383 IPR021109 -
Vian4g00612 383 Gene3D Acid Proteases 8 195 IPR021109 -
Vian4g00612 383 PANTHER ASPARTYL PROTEASES 21 371 IPR001461 GO:0004190|GO:0006508
Vian4g00612 383 ProSiteProfiles Peptidase family A1 domain profile. 28 379 IPR033121 -
Vian4g00612 383 Pfam Xylanase inhibitor C-terminal 224 379 IPR032799 -
Vian4g00612 383 SUPERFAMILY Acid proteases 25 383 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00612 Vian-Chr4 7379670 7380821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00612 28 383 Miscellaneous Gene Families AT1G77480 24.011 6.80e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00612 - K22683 var:108330182 796.193