Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00593 ATGAAACGCGACACCTTTCGGAACACAAGATGTGCTAGGTTTAGTGCTGATGGAAGGTTTGTTGCCACTGGAAGTGCCGATACTTCAATAAAGCTATTTGAGGTTTCAAAGATCAAGCAGATGTTGCTGCCAGAGGCAAAGGATGGTCCTGTGCGGCCTGTCATTCGAACATATTATGATCATATACAACCAATAAATGATCTGGATTTTCATCCACAAGGTACTATCCTGATTTCTGGAGCCAAAGATCAAACAATAAAGTTTTTTGATATTTCAAAAACGAATGCAAAGAGAGCATACAGGGTTATCCAGGACACACACAATGTTCGATCTGTATCTTTCCATCCATCTGGGGACTTTCTGCTGGCAGGAACTGATCATGCAATTCCACATTTGTATGATATAAATACCTTTCAGTGTTATCTGTCATCAAATATCCCAGAGACCAGCCCTAGTGGAGCCATAAACCAGGTCAGATATTCTTGTACAGGTTCCATGTATGTTACAGCATCTAAAGATGGTGCTATTAGGTTATGGGATGGCATCACAGCCAATTGTGTGCGGTCAATAACTGCAGCACACGGAACAGCTGAGGCTACCAGTGCAATTTTTACCAAAGATCAAAGGTTTGTTCTCTCCTGTGGGAAGGATTCTACCGTAAAGCTTTGGGAAGTCGGCTCTGGAAGATTAGTCAGACAATATCTTGGAGCTATACATACCCAACTAAGGTGTCAGGCTATTTTTAATCAGACAGAAGAATTTATTATATTCATAGATGAACTGAGCAATGAGATCGTTATCTGGGATGCAATGACAACAGAAAAAGTTGCAAAGTGGCCTTCTAATCATGTTGGTGCACCCCGTTGGCTTGAACACTCACCAGTTGAGTCAGCTTTTATTTCCTGTGGAACTGATAGGTCAGTTCGGTTCTGGAAGGAGACTGTATAA 948 0.4167 MKRDTFRNTRCARFSADGRFVATGSADTSIKLFEVSKIKQMLLPEAKDGPVRPVIRTYYDHIQPINDLDFHPQGTILISGAKDQTIKFFDISKTNAKRAYRVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSSNIPETSPSGAINQVRYSCTGSMYVTASKDGAIRLWDGITANCVRSITAAHGTAEATSAIFTKDQRFVLSCGKDSTVKLWEVGSGRLVRQYLGAIHTQLRCQAIFNQTEEFIIFIDELSNEIVIWDAMTTEKVAKWPSNHVGAPRWLEHSPVESAFISCGTDRSVRFWKETV 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00593 315 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 180 - -
Vian4g00593 315 Pfam WD domain, G-beta repeat 185 223 IPR001680 GO:0005515
Vian4g00593 315 Pfam WD domain, G-beta repeat 153 180 IPR001680 GO:0005515
Vian4g00593 315 Pfam WD domain, G-beta repeat 11 33 IPR001680 GO:0005515
Vian4g00593 315 Pfam WD domain, G-beta repeat 106 129 IPR001680 GO:0005515
Vian4g00593 315 Pfam WD domain, G-beta repeat 292 312 IPR001680 GO:0005515
Vian4g00593 315 Pfam WD domain, G-beta repeat 55 90 IPR001680 GO:0005515
Vian4g00593 315 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Vian4g00593 315 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 9 315 IPR044633 GO:0005848|GO:0031124
Vian4g00593 315 SMART WD40_4 183 224 IPR001680 GO:0005515
Vian4g00593 315 SMART WD40_4 272 312 IPR001680 GO:0005515
Vian4g00593 315 SMART WD40_4 137 180 IPR001680 GO:0005515
Vian4g00593 315 SMART WD40_4 96 134 IPR001680 GO:0005515
Vian4g00593 315 SMART WD40_4 1 34 IPR001680 GO:0005515
Vian4g00593 315 SMART WD40_4 51 90 IPR001680 GO:0005515
Vian4g00593 315 CDD WD40 10 312 - -
Vian4g00593 315 Gene3D - 4 314 IPR015943 GO:0005515
Vian4g00593 315 PRINTS G protein beta WD-40 repeat signature 77 91 IPR020472 -
Vian4g00593 315 PRINTS G protein beta WD-40 repeat signature 167 181 IPR020472 -
Vian4g00593 315 PRINTS G protein beta WD-40 repeat signature 211 225 IPR020472 -
Vian4g00593 315 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 233 IPR001680 GO:0005515
Vian4g00593 315 SUPERFAMILY WD40 repeat-like 9 312 IPR036322 GO:0005515
Vian4g00593 315 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 189 IPR001680 GO:0005515
Vian4g00593 315 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 92 - -
Vian4g00593 315 FunFam Cleavage stimulation factor subunit 50 3 315 - -
Vian4g00593 315 ProSitePatterns Trp-Asp (WD) repeats signature. 211 225 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00593 Vian-Chr4 7135195 7138429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00593 55 311 Miscellaneous Gene Families AT5G08390 20.463 1.47e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00593 K14406 - gmx:100809908 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00593 4 7135195 7138429 Vian4g00593 4 7135195 7138429 ECH