Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00585 ATGTCGGAGAGCAACCACAAGGAAATCCAAATCCGTGCCCTAACCGGCGAATCAATCACTCTTCTCGTCACTCCCACCACAACCCTCCACCACCTGAAGCTTCTCCTCCGCCATTCATTCCCCCCCGCCACCACCTCCCCCAATTTCCACCTCTTTTTCAAGGCACCACCACACTATTTCCCTCCTCCCTTTTCTCTTTCACCGACTGGTGAAAAATTGCGATTGCAGACTCCAATTGCCTCTTACCCCATCCAAAGCGACGAGTTTATCGTCCTCATTCCCTTCACCAAGAAGGAAAAGGAACCTTCTAGAACATCCGACTCTCTTCAGCCTAATGTTCCTCACACTACCAATGCTTCAAGTTCGACCTCTGATCTCGCGGATTCTACGTGGGCCTCCATAAAGGAGGATTTATCACTTTTACGTGAGAGTAATGCGTCTAATTCCGAGTCAGGAAAAGAAAAACCGTTGGAGGCCTCGACCGAAGGGGGTTTAGGTCGTGAGAAGCAGATGGAGCTTCCCTATCATCTTATACTGAACACATTGCGAGATGGTAGCGAGGGTGGTCCTCTTAGCGAGCACAATTGCGAGGTTTTCGCGAAGGTTTTGGAATCCGTGAATTGTTTATCGGAACTGCCTCTCGGACACTGCAAGTTGCTGAAACGAGCTCGTTCGAAAGGAGGTGGAGGAGGTGGCGGCGGCGCCCTGAGAAAACGTGTCAGTGACGGTGTTGTATGTTTGTGTCCACCGTGGTTGAAGATAGCGGTGAAGGCGTTTGCATTTGTGAACATTTTTTCCGCGTTTATTTATTTGCAACTTCGAGATTTGACCTCGAGTCTTCTGGAGGAGGCGCTTAGTGAGCTTGCTAAGTTTGGGGTTAAACTTGGCCTCGTTGACATCAAGAATCTTTCGCTTCTCTGTCCTCATATGGTATGTTTCAGGGATGATGTAGAGAAGACAAGTTTTGGTGATAACATTGTTGTCCTTAATCATTCAACAGGCAATACAGATCTAGTTGAAGAAAATCCTAAAAGAGTTCGCAAGTGGTTGTATATTTCAAAGACTGTCAGTACATTGAAGAGAAGGGACAGTTCTTTCCGTAAATTTCTAGGATGGGCTTTTGAACAGTTGCCGTATGAATTTGGAGATGAGATGACTGTGGGGATTTCCTTGGAAGAGTTGCGTGTTGCAGTCAAGGACAATGCTTTTGTCAAAAAAGAAGACAAATCCAAACGTGTAAAGAGAAGCAAAACTACCTCAAAATCTGACTTAAACCATATTGGGTGTCATGACACAAAGTCATTAATGGCTGTGGAGATGATTGATCATCTTAAGAAAGGAATTGGATCAGAAGGGCAGATTGTGCATATTGAAGACATATGTGCCAGGAAAGCAATTTACAGCGAGATCCCTATTGATCTATCAGAGAAAATGAGATCTGCACTGAAGTGTATTGGAGTTTCCAAATTTTACAGTCACCAGGCAGAGTCTATACAAGCTTCTCTTCATGGTGAAAATGTTGTTGTGGCTACAATGACATCAAGTGGCAAATCCCTTTGCTATAATCTACCAGTTCTAGAAGTTTTGTCTACAAATTCATCTTCATGTGCTTTGTACATATTTCCCACGAAGGCATTAGCTCAAGATCAACTAAGAGCTTTGTTACACATGACAAAAGGATTTGATAATGACTTTAATATTGGTATATATGATGGTGATACTTCTCAGAGTGAGAGGATGTGGCTCCGTGATAATTCTAGATTGTTGATCACAAATCCAGATATGTTACACATATCAATCTTACCCCATCATCAACAGTTTAGTCGAATTTTATCAAACCTAAGGTTTGTGGTAATTGATGAAACTCATACTTACAAGGGAGCGTTTGGAAGTCACACCGCCCTTATTTTGAGGAGGCTAAAACGACTCTGTTCACATGTATATGGATCTGTTCCTTCTTTCGTTTTTTCTACTGCAACTTCTGCAAATCCCCGGGAGCATTCTATGGAACTTGCAAATTTATCTACGCTGGAGCTATTTCAGAATGATGGAAGTCCATCTACAAGGAAACTTTTTGTCCTTTGGAACCCTGCTGTGCGTCCAAAATCTTTCATTAAAAAAGCTCAGTTTGCTATGGGAACTGATGAGTTGGCTGATGAAAGTGCTAATTTTGTTCGTTCAAGCCCAATTGTGGATGCTTCACGTCTTTTTGCAGAAATGGTTCAGCATGGTCTTCGCTGTATTGCATTTTGTAAATCAAGGAAACTTTGTGAGCTTGTTTTATCCTACACCCGTGAGATTCTTCATGAGACAGCCCCGCATCTGGTTGATTCCATATGTGCATATCGTGGTGGCTACATTGCAGAGGAAAGAAGAAAAATAGAGAGTTCATTTTTTGGTGGTAAAATATGTGGTGTTGCTGCAACTAATGCTCTTGAGTTGGGCATTGATGTTGGAGAAATTGATGCCACTCTGCATCTAGGATTTCCTGGTAGTATCGCAAGCTTATGGCAACAAGCTGGTAGAGGTGGGAGGAGAGATAAACCATCGCTTGCTGTCTATGTTGCATTTGGGGGACCTCTTGATCAATACTTCATGAGACATCCCAATAAACTTTTTGGAAGACCAATTGAATGTTGTCATGTTGATTCTCAAAACAAAAAGATTCTTGAGCAACATTTGGTCTGTGCTGCTCATGAACACCCTCTAAGTGTGAACTACGATGAACAATATTTTGGTCCTTGCTTGGAGAGTGTTATAATTTCTCTAAAAGCTGCAGGATACTTGAGTTCTATTCTATCATCTGATTCTTCTAGAATATGGAACTACATTGGTCCCGAGAAATTACCCTCACATGCAGTCAATATCCGAGCAATAGAAACTGTAAGATACAGTGTCATAGATCAGAAAAAAAATAAAGTCCTTGAAGAGATAGAGGAAAGCAAGGCATTCTTTCAGGTATATGAAGGTGCTGTGTACATGTGCCAGGGGAAAACCTATTTGGTTGAAAAATTAGATCTGTCTAATAAAACTGCTTTCTGCAAAGAGGCTGATCTAAAGTATTATACAAAGACTCGAGATTACACTGATATTCATGTCATTGGGGGTAATGTTGTATGTATTCTCCTGCTTGCTCGAGATCCTTTGGATTATCTTCATGAATTTTATAGTGCTTATCCGCTCAAAGTAGAAACGAACAACTTTCCAAAATCAAATGCCCGGGCTGATATATGCAAAGTAACAACTACTTGGTTTGGCTTTTATCGTATTTGGAGAGGAAGCAATCAAATCTTTGATGCTGTTGACCTCGCACTTCCTCATTACTCATACGAGTCACAGGCAGTTTGGGTTCCTGTGCCACTGTCTATAAAAGAAGCAGTAGTCAAGCAAACTTATGATTTCCGTGGAGGTCTGCATGCTGCTTCACATGCAATTTTACACGTAGTGCCTTTACACATCACTTGCAACTTGTCTGACTTGGCTCCTGAATGTCCAAACCCTCATGATGCCCGATTTTACCCCGAAAGAATTCTAATATATGATCAACATCCCGGAGGATGTGGAATTTCAGTGCGGGTTCAACCCTATTTTACAAAGTTCCTGGAAGCCGCACTAGAGCTTCTCACATGTTGCTGCTGCTCAGCGGAAGCGGGTTGCCCTAATTGTGTTCAGAGCTTTGTTTGCCATGAATATAACGAGGTTTTGCACAAGGATGCAGCCATCATGATCATAAAGGGTATTCTGGATGCGGGAAACTAG 3759 0.4225 MSESNHKEIQIRALTGESITLLVTPTTTLHHLKLLLRHSFPPATTSPNFHLFFKAPPHYFPPPFSLSPTGEKLRLQTPIASYPIQSDEFIVLIPFTKKEKEPSRTSDSLQPNVPHTTNASSSTSDLADSTWASIKEDLSLLRESNASNSESGKEKPLEASTEGGLGREKQMELPYHLILNTLRDGSEGGPLSEHNCEVFAKVLESVNCLSELPLGHCKLLKRARSKGGGGGGGGALRKRVSDGVVCLCPPWLKIAVKAFAFVNIFSAFIYLQLRDLTSSLLEEALSELAKFGVKLGLVDIKNLSLLCPHMVCFRDDVEKTSFGDNIVVLNHSTGNTDLVEENPKRVRKWLYISKTVSTLKRRDSSFRKFLGWAFEQLPYEFGDEMTVGISLEELRVAVKDNAFVKKEDKSKRVKRSKTTSKSDLNHIGCHDTKSLMAVEMIDHLKKGIGSEGQIVHIEDICARKAIYSEIPIDLSEKMRSALKCIGVSKFYSHQAESIQASLHGENVVVATMTSSGKSLCYNLPVLEVLSTNSSSCALYIFPTKALAQDQLRALLHMTKGFDNDFNIGIYDGDTSQSERMWLRDNSRLLITNPDMLHISILPHHQQFSRILSNLRFVVIDETHTYKGAFGSHTALILRRLKRLCSHVYGSVPSFVFSTATSANPREHSMELANLSTLELFQNDGSPSTRKLFVLWNPAVRPKSFIKKAQFAMGTDELADESANFVRSSPIVDASRLFAEMVQHGLRCIAFCKSRKLCELVLSYTREILHETAPHLVDSICAYRGGYIAEERRKIESSFFGGKICGVAATNALELGIDVGEIDATLHLGFPGSIASLWQQAGRGGRRDKPSLAVYVAFGGPLDQYFMRHPNKLFGRPIECCHVDSQNKKILEQHLVCAAHEHPLSVNYDEQYFGPCLESVIISLKAAGYLSSILSSDSSRIWNYIGPEKLPSHAVNIRAIETVRYSVIDQKKNKVLEEIEESKAFFQVYEGAVYMCQGKTYLVEKLDLSNKTAFCKEADLKYYTKTRDYTDIHVIGGNVVCILLLARDPLDYLHEFYSAYPLKVETNNFPKSNARADICKVTTTWFGFYRIWRGSNQIFDAVDLALPHYSYESQAVWVPVPLSIKEAVVKQTYDFRGGLHAASHAILHVVPLHITCNLSDLAPECPNPHDARFYPERILIYDQHPGGCGISVRVQPYFTKFLEAALELLTCCCCSAEAGCPNCVQSFVCHEYNEVLHKDAAIMIIKGILDAGN 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00585 1252 Pfam MrfA Zn-binding domain 1141 1223 IPR018973 -
Vian4g00585 1252 Gene3D - 730 854 IPR027417 -
Vian4g00585 1252 MobiDBLite consensus disorder prediction 101 127 - -
Vian4g00585 1252 Gene3D - 463 681 IPR027417 -
Vian4g00585 1252 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 498 679 IPR014001 -
Vian4g00585 1252 Pfam DEAD/DEAH box helicase 492 661 IPR011545 GO:0003676|GO:0005524
Vian4g00585 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 537 866 IPR027417 -
Vian4g00585 1252 SMART ultradead3 486 692 IPR014001 -
Vian4g00585 1252 MobiDBLite consensus disorder prediction 106 127 - -
Vian4g00585 1252 Pfam Helicase conserved C-terminal domain 739 845 IPR001650 -
Vian4g00585 1252 FunFam DEAD/DEAH box helicase 725 874 - -
Vian4g00585 1252 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 732 890 IPR001650 -
Vian4g00585 1252 SMART helicmild6 766 847 IPR001650 -
Vian4g00585 1252 MobiDBLite consensus disorder prediction 143 166 - -
Vian4g00585 1252 CDD DEXHc_Hrq1-like 490 671 - -
Vian4g00585 1252 CDD SF2_C_Hrq 692 856 - -
Vian4g00585 1252 PANTHER ATP-DEPENDENT HELICASE HRQ1 32 1250 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00585 - - gmx:100819522 2051.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00585 4 7001127 7011747 Vian4g00585 4 7001127 7011747 ECH