Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00578 ATGAAGGTCCGGTCGGTGAAGTTAAGGGAGGCCCACGGTGCCATTGGCGGCCGCGCGTCTTTCTGCTCCGTTCTGTGGGACCAGCAAGCCAGTCATTTGGTTACCGCTTCCTCTTCCGACATCTCCATCTGTATCCACGACCCCCTTTCCCCCTCCATCTCCCCCAAAATCCTCCGCCACCACCGCGACGGCGTCACTGCCTTGGCTCTTAGCCCCAATTCCACTTGCCTCGCTTCCGGATCCATCGATCGCTCCGTCAAACTCTACAAGTTCCCCGGTGGAGAGTTTGAGAGAAACATTACAAGGTTTACACTCCCAATACGTTCATTGGCATTTAACAAATCAGGGAGCATGGTTGCTGCTGCTGGTGATGATGAGGGTATCAAGCTTATTAATACATTTGATGGTACCATTACTAGGGTTCTTAAAGGACACAAAGGGTCTGTCACTGGTTTGGCTTTTGACCCTAATGGTGAATACTTAGCCTCTATGGATTCAACTGGAACTGTTATTTTGTGGGAGCTTCAGTCTGGGAAAATCATTCATAACCTCAAAGGCATAGCTCCTGACACTGGACTAGATGTTTCAGCTGTGAATGTTCTTTGCTGGAGTCCAGATGGTGAGACCCTAGCTGTTCCTGGTTTGAAAAATGATGTTGTAATGTATGACAGGGACACTGCTGAGAAGTTGTTTTCTTTGAGAGGGGATCACATACAGCCAATATGTTTCTTGTGTTGGTCACCCAATGGCAAGTACATTGCTACCTCTGGTTTAGACAGGCAGGTTCTGATCTGGGATGTTAATAGGAAGCAGGACATTGACAGACAGAGGTTTGATGAAAGAGTGTGTTGCATGGCGTGGAAGCCAATTGGGAATTCCTTGGCTGTTGTGGATGTTATGGGGAAGTATGGTATTTGGGACAATGTTATTCCTTCGTCTATGAAGTCTCCAACTGAGGATATACCCGTGAAATATAAGAGCAATGGGGTTCTTTTGTTTGATGAGGAGGATCATGAAAATAGTGCAAGTGGAAGCTTGAGTGATATTGGTGAAAATAGTAATGAGGAATTTGAGCCAACAAGCAGGAAAAGATTGCGTAAACACTCCTTGAGTGAGGAAAATTTAGGTGAGGATGGATATGAGGAAATTGCATTGTATCCGAAGGCTGATTCTCACAATAAACGAAATCGATCAAGCAAGGAAAAATTGGATAGTGGGAATATGGGATTTAGAGGCACCATAATAACATCTAAGGCAAAAAGGCAGGAGGCATTTCAGCCAGGATCTACACCTTTTCAGCCTGGAAAAAGGCGTTTCTTATGCTACAACATGCTTGGATGTATAACCTCTATTGAACACGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGCACTCCACGAGTTCCTTCAATGACTGATCATTTTGGATTCACAATGGCAGCTTTGAGTGAGAGTGGGAGTGTCTTTGCAAATCCTTGTAAGGGGGAGAAGAACATGAGCACCCTCATGTATCGCCCATTTAGCAGCTGGGCTAACAATAGTGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGCGCTGCTTGGGTTGCTGCTGTAACTAGTTTGAACTATCTTCGCATCTTCTCTGAGAGTGGTTTGCAGAAACATGTATTTACACTAGATGGGCCAGTGTTGACTGCAACAGGTTTCAAGGAGAAGCTTGCAGTTGTCACTCATGTCTTTGATTGCCTTTCCTCAAATGATCAGATGCTAGAGTTTATAGTATTTAATATTCCTCAAGGGATCCAACTCCTTCAAGGTCGATTACCAATATCTCCTGGTTCATCCCTAAGTTGGTTTGGGTTTAGTGAGGAAGGCCAACTGTGTTCATATGATTCGAAGGGTGTGCTACGATCGTATACAAGCCAATTTGGTGGCAGATGGGTCCCACTCTTCAGTGCTTCAAAAGAGAAGTCAAACGAAAACTACTGGGTGACGGGGTTGAATGCAAGCAAGTTATTTTGTGTGGTATGCAAAAAGCCTGAAGAGTTCCCTCAGGTCATGCCTAAGCCAGTTCTTACTCCGTTGAGTCTTTCATTTCCTCTGGCTTCCTCTGACTTGGGATCTGAAGTCCATGAAAACGAGTTTATGATGAACAACTTGCATCTCTTTTTGATTCAGAGAAGAATGGAAGAAATGGCATCTGTAGGTCTGGACACTACTTCACTTGATGACGACGCTTTCAATTTGGAAGCAGCGCAGGATAAATGTATACTGAGGCTTATAGCATCATGCTGCAACAGCAATAAGCTTGTGCGAGCTACTGAACTTGTGAAACTTTTGACTCTGGAAAAATCAATGAGAGGTGCGATAAAACTTGTTACTGCTCTGAAACTTCCAAACCTGGCCGAAAGGTTCAGCAGCATATTGGAGGAAAGGCTACTCGAGGAAGCAAAAAATGCTACAGAAACCAACATCAAAGAAAACTGTGTTGCACCCATTAAAGCTGATGCTCTTCATAACGCAATCAAGGCCCCAACTCGAACTGAATCATTAAACGCAGTTACAATGTCATCACCAAAATTATCTTCTCCATCATTCATAAAGAAAGACAAAACTCAAGAGGGAGGTAAAGCTGGCATAATTAGAACTCCAATGGTAAATGAAACTATGAAGGGAAAGCAGACAGGGGAAGAAACAAGTGACAAGGTGGGGAAGGTGGGAGACATGCGTCAGTTGGAACAAACTCCTCATCCATTAAAGAAGAATGGACTTGACAAATCAGAGACTGGTTTGGGACAATCAAATCGTCCGTCCAATCCATTTTTGAAGTCTACTATCAAGTAA 2856 0.4401 MKVRSVKLREAHGAIGGRASFCSVLWDQQASHLVTASSSDISICIHDPLSPSISPKILRHHRDGVTALALSPNSTCLASGSIDRSVKLYKFPGGEFERNITRFTLPIRSLAFNKSGSMVAAAGDDEGIKLINTFDGTITRVLKGHKGSVTGLAFDPNGEYLASMDSTGTVILWELQSGKIIHNLKGIAPDTGLDVSAVNVLCWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHIQPICFLCWSPNGKYIATSGLDRQVLIWDVNRKQDIDRQRFDERVCCMAWKPIGNSLAVVDVMGKYGIWDNVIPSSMKSPTEDIPVKYKSNGVLLFDEEDHENSASGSLSDIGENSNEEFEPTSRKRLRKHSLSEENLGEDGYEEIALYPKADSHNKRNRSSKEKLDSGNMGFRGTIITSKAKRQEAFQPGSTPFQPGKRRFLCYNMLGCITSIEHDGYSHIEIDFHDTGSTPRVPSMTDHFGFTMAALSESGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGAAWVAAVTSLNYLRIFSESGLQKHVFTLDGPVLTATGFKEKLAVVTHVFDCLSSNDQMLEFIVFNIPQGIQLLQGRLPISPGSSLSWFGFSEEGQLCSYDSKGVLRSYTSQFGGRWVPLFSASKEKSNENYWVTGLNASKLFCVVCKKPEEFPQVMPKPVLTPLSLSFPLASSDLGSEVHENEFMMNNLHLFLIQRRMEEMASVGLDTTSLDDDAFNLEAAQDKCILRLIASCCNSNKLVRATELVKLLTLEKSMRGAIKLVTALKLPNLAERFSSILEERLLEEAKNATETNIKENCVAPIKADALHNAIKAPTRTESLNAVTMSSPKLSSPSFIKKDKTQEGGKAGIIRTPMVNETMKGKQTGEETSDKVGKVGDMRQLEQTPHPLKKNGLDKSETGLGQSNRPSNPFLKSTIK 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00578 951 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Vian4g00578 951 MobiDBLite consensus disorder prediction 898 912 - -
Vian4g00578 951 SMART WD40_4 135 174 IPR001680 GO:0005515
Vian4g00578 951 SMART WD40_4 226 266 IPR001680 GO:0005515
Vian4g00578 951 SMART WD40_4 268 307 IPR001680 GO:0005515
Vian4g00578 951 SMART WD40_4 51 90 IPR001680 GO:0005515
Vian4g00578 951 SMART WD40_4 93 132 IPR001680 GO:0005515
Vian4g00578 951 SMART WD40_4 2 47 IPR001680 GO:0005515
Vian4g00578 951 SMART WD40_4 177 223 IPR001680 GO:0005515
Vian4g00578 951 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Vian4g00578 951 CDD WD40 22 310 - -
Vian4g00578 951 MobiDBLite consensus disorder prediction 857 873 - -
Vian4g00578 951 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Vian4g00578 951 Pfam WD domain, G-beta repeat 138 173 IPR001680 GO:0005515
Vian4g00578 951 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Vian4g00578 951 MobiDBLite consensus disorder prediction 355 370 - -
Vian4g00578 951 MobiDBLite consensus disorder prediction 892 951 - -
Vian4g00578 951 MobiDBLite consensus disorder prediction 857 877 - -
Vian4g00578 951 Gene3D - 2 194 IPR015943 GO:0005515
Vian4g00578 951 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Vian4g00578 951 MobiDBLite consensus disorder prediction 386 404 - -
Vian4g00578 951 MobiDBLite consensus disorder prediction 931 951 - -
Vian4g00578 951 Gene3D - 195 308 IPR015943 GO:0005515
Vian4g00578 951 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Vian4g00578 951 FunFam Transducin family protein / WD-40 repeat family protein 195 322 - -
Vian4g00578 951 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Vian4g00578 951 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Vian4g00578 951 MobiDBLite consensus disorder prediction 386 410 - -
Vian4g00578 951 Pfam Minichromosome loss protein, Mcl1, middle region 424 705 IPR022100 -
Vian4g00578 951 SUPERFAMILY WD40 repeat-like 19 307 IPR036322 GO:0005515
Vian4g00578 951 MobiDBLite consensus disorder prediction 340 370 - -
Vian4g00578 951 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 948 - -
Vian4g00578 951 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00578 Vian-Chr4 6907780 6912659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00578 58 272 Miscellaneous Gene Families AT5G08390 23.502 2.15e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00578 K11274 - gmx:100809300 1629.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00578 4 6907780 6912659 Vian4g00578 4 6907780 6912659 ECH