LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g00470	ATGGAAGGAGGTGTCGCAGAAGCCGATGTCTCTGCCTTCAGAGAATGTCTGTCTCTTTCATGGAAAAACCCTTTTGTTCTTCGCCTTGCTCTCTCTGCTGGAATTGGAGGCTTTCTCTTCGGCTACGACACTGGAGTCATATCTGGAGCTCTCTTGTATATCAGAGATGATTTCAAAGAGGTCGATACAAAGACTTGGCTTCAGGAAGCAATAGTGAGCATGGCACTTGCTGGAGCAATCATAGGAGCTGCAGTTGGTGGATGGATCAACGATCGATTTGGAAGAAAAAAGTCAATAGTTGTAGCAGATACCCTCTTTTTCATTGGGTCTATCGTGATGGCTACTGCAATGAACCCAGCAACCTTAATTGTTGGTCGTGTATTTGTTGGCCTTGGTGTTGGAATGGCCTCAATGGCATCCCCTTTATACATCTCAGAAGCATCACCAACAAGAGTTCGAGGAGCCCTTGTTAGTCTCAATGGACTTCTCATCACCGGAGGACAATTCCTTTCCTATCTCATCAACTTGGCCTTCACAACTGTACCAGGAACATGGAGGTGGATGTTGGGAGTTGCAGCAGTACCAGCTCTGACACAAGTCATATTGATGGCTTTGCTCCCAGAATCTCCTCGTTGGTTGTTCAGAAAGGGAAGAGAAGAAGAAGCTAAAGAAATTTTGAGGAAGATTTACCCTCCCGAACATGTTGAAGATGAGATAAATGCTCTGAAGGAATCGGTTGAAATGGAAGTGAGGGAAGCTGCAGGTTCTGACAAAGTGAGCATAATGAAACTACTGAAAACCAAGACGGTGAGAAGAGGTCTATATGCAGGAATGGGTCTTCAAATCTTCCAACAGTTTGTGGGAATCAACACTGTGATGTACTACAGCCCCACCATTGTTCAGTTGGCTGGTTTTGCGTCCAATAGGGTTGCACTGCTTCTTTCACTGATCACTGCAGGGCTAAATGCATTTGGCTCTATTTTGAGCATATATTTCATTGACAAGACTGGGAGGAGGAAGCTTGTGTTGTTGAGTTTGTGTGGTGTAGTAGTTTCCCTTGTTGTTTTAACCGTTGTTTTTCATGAGACCACCACTCACTCCCCAATGGTTAGCACAATTGAAACCTCTCACTTCAACAATACCTGCCCTGGTTACACCAGAGCTACGAACCCTTCTCAATGGGATTGCATGACGTGCCTCAAGGCTTCTCCAGAGTGTGGCTTTTGTGCTTCTAGAGCCAATAAGCTCTTACCCGGTGCATGCTTGATTTCAAACGAGAGAACAGAAGAGGAGTGCAACAAAGAGGAGAGGGAATGGTACAGTAGGGGATGTCCTAGTAAATATGGGTGGCTAGCATTAATTGGGCTAGCACTGTACATCATATTCTTCTCACCAGGGATGGGAACAGTTCCATGGGTTGTGAACTCTGAGATCTATCCCTTAAGGTACAGAGGAATCTGTGGAGGAATAGCATCTACCTCCAATTGGGTTTCAAATCTCATTGTGGCTCAGTCCTTTCTGTCCTTGACACAAGCCATTGGGACCTCATCCACATTCATGATCTTCATATTCATCACTGTTGCAGCCATTATCTTTGTCATTATTTTCGTGCCAGAAACCAAAGGACTTCCAATTGAGCAAGTGGAGAACATGCTCCAAACAAGATCCTTCAACTTTAAGTTCTGGCAGACGAGTCCTCAGTCTGCTCAAGTACCAGACCAAAAGCATCAATCAGTTTGA	1740	0.4494	MEGGVAEADVSAFRECLSLSWKNPFVLRLALSAGIGGFLFGYDTGVISGALLYIRDDFKEVDTKTWLQEAIVSMALAGAIIGAAVGGWINDRFGRKKSIVVADTLFFIGSIVMATAMNPATLIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGLLITGGQFLSYLINLAFTTVPGTWRWMLGVAAVPALTQVILMALLPESPRWLFRKGREEEAKEILRKIYPPEHVEDEINALKESVEMEVREAAGSDKVSIMKLLKTKTVRRGLYAGMGLQIFQQFVGINTVMYYSPTIVQLAGFASNRVALLLSLITAGLNAFGSILSIYFIDKTGRRKLVLLSLCGVVVSLVVLTVVFHETTTHSPMVSTIETSHFNNTCPGYTRATNPSQWDCMTCLKASPECGFCASRANKLLPGACLISNERTEEECNKEEREWYSRGCPSKYGWLALIGLALYIIFFSPGMGTVPWVVNSEIYPLRYRGICGGIASTSNWVSNLIVAQSFLSLTQAIGTSSTFMIFIFITVAAIIFVIIFVPETKGLPIEQVENMLQTRSFNFKFWQTSPQSAQVPDQKHQSV	579

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g00470	579	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	29	541	IPR020846	GO:0022857
	Vian4g00470	579	FunFam	Probable inositol transporter 2	421	560	-	-
	Vian4g00470	579	PRINTS	Sugar transporter signature	123	142	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Vian4g00470	579	PRINTS	Sugar transporter signature	476	488	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Vian4g00470	579	PRINTS	Sugar transporter signature	37	47	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Vian4g00470	579	PRINTS	Sugar transporter signature	284	294	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Vian4g00470	579	PRINTS	Sugar transporter signature	453	474	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Vian4g00470	579	PANTHER	PROTON MYO-INOSITOL COTRANSPORTER	12	565	-	-
	Vian4g00470	579	CDD	MFS_HMIT_like	32	539	-	-
	Vian4g00470	579	NCBIfam	sugar porter family MFS transporter	20	369	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Vian4g00470	579	ProSitePatterns	Sugar transport proteins signature 2.	128	153	IPR005829	GO:0016020\|GO:0022857\|GO:0055085
	Vian4g00470	579	Pfam	Sugar (and other) transporter	30	365	IPR005828	GO:0016020\|GO:0022857\|GO:0055085
	Vian4g00470	579	Pfam	Sugar (and other) transporter	448	551	IPR005828	GO:0016020\|GO:0022857\|GO:0055085
	Vian4g00470	579	Gene3D	MFS general substrate transporter like domains	21	379	IPR036259	-
	Vian4g00470	579	Gene3D	MFS general substrate transporter like domains	438	558	IPR036259	-
	Vian4g00470	579	FunFam	Probable inositol transporter 2	20	381	-	-
	Vian4g00470	579	SUPERFAMILY	MFS general substrate transporter	19	549	IPR036259	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g00470	Vian-Chr4	5558882	5563620	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g00470	1	578	Organic Solute Cotransporters	AT1G30220	69.072	0.0	823

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g00470	K08150		-	gmx:100783605	981.089