Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00465 ATGGATCAGCATGAGGATGAAAGTAACAGCAAACAAGACGATGAGGAAGCTGTTGCTCGCCTTGAGGAAATAAAAAAGTCTGTTGAGGCAAAGATGGCTTTACGTCAAAGCAATTTGAATCCTGAAAGGCCTGATTCAGGATTTTTAAGGACATTGGATTCCAGTATTAAGCGCAACACTGCAGTTATTAAGAAGCTGAAGCAGATCAATGAGGAACAGCGTGAATCTCTGATGGATGAGTTGAGAAGTGTCAACTTAAGCAAATTTGTCAGTGAAGCCGTGACTGCAATATGTGATGCCAAACTTAGAAGTTCTGATATACAAGCTGCAGTTCAGATTTGTTCTTTGCTTCATCAAAGGTACAAGGACTTCGCACCAAGCCTGATTCAAGGGCTTCTCAAAGTCTTCTCTCCTGGAAAGCCTGGTGATGAGTCAGACGCTGATAGAAACTTGAAGGCAATGAAGAAGCGCAGCACCCTGAAACTTCTATTGGAACTTTTCTTTGTTGGAGTTATTGAAGATGGTGGCATTTTTATAAATATCATAAAAGATCTTACGAATGGGGAACAGCTGAAAGATCGGGATGCTGCACAAACAAATTTGACCCTTCTTTCTAGTTTTGCTCGTCAGGGGAGAATTTTTCTTGGACTCTCTGTTAGTGGGCTGGAAATTCATGAAGAGTTTTTTAAAGGCCTTAACATCACAGCCGATCAGAAGAAAGTTTTCCGGAAAGCATGCTATTCCTTTTATGATGCTTCTGCTGAACTACTTCAGTCTGAGCATTCTTCACTTCGATTAATGGAGCATGAAAATTCAAAGATTTTGAACGCAAAAGGAGAGCTTAGTGATGAAAATATTGCTTCATATGAAAAGCTTCGTAAATCCTATGACCATTTATACAGAAATGTTTCATCATTAGCAGAAGCACTTGATATGCAGCCTCCTGTAATGCCAGAGGATGGACACACGACTAGGGTTACCAGTGGTGAGGAGGGTATTTCTTCTGCTTCTGGTAAAGATTCTTCTGCTGTTGAACCAATATGGGATGATGAAGATACAAGGACTTTCTATGAATGTTTACCTGATCTTAGAGCGTTTGTTCCTGCTGTGCTTTTGGGAGAAACAGAGCCAAAAAGCAGTGATCAATCTGCAAAGGGTCAAGACCAACCAACTGAAATAGTACCTGAATCAGACAAAGGTCAACAGACCACCCATGAAAGTGGAGAGATCTCTATAGAGTCTAATGCTTTGCCAGAGGCAGAAAGCACAGAAAGAGTGAAGGAGAAGGAAGAAAAAGAAAAGTCTAAAGAATTGGACAGAGAGAAGGAAAAAGAAAAAGATAATGATAAAAAGGGGGAAAATGAAAAAGACAAACTCAGAAGTCTTGAAGGGACAAATTTGGATGCTCTACTGCAGAGGCTTCCTGGTTGTGTGAGCCGGGACCTTATAGATCAATTAACTGTTGAGTTCTGTTATCTGAATTCAAAATCAAATCGAAAAAAGCTTGTGAGGGCTCTGTTCAATGTGCCAAGGACATCTCTAGAACTGTTAGCATATTATTCACGCATGGTTGCCACACTCTCAACTTGTATGAAGGATGTCTCCTCCATTTTGTTACAAATGCTGGAGGAGGAATTCAATTTCTTAATAAATAAAAAGGACCAGATGAACATTGAGACAAAGATAAGGAACATCAGGTTCATTGGAGAACTTTGCAAGTTCAAAATTGCTTCTCCTGGCCTAGTTTTCAGTTGTTTGAAGGCCTGTTTAGATGATTTTACACATCACAACATTGATGTAGCTTGCAATCTTCTTGAAACATGTGGCCGTTTTCTGTATCGATCTCCAGAAACTAGTATAAGAATGAGTAACATGTTGGAGATACTGATGCGCTTGAAAAATGTAAAAAATTTGGATCCGAGACATAGCACTTTAGTGGAGAATGCATACTACCTTTGCAAACCACCAGAAAGATCTGCACGAGTAGCTAAAGTTCGTCCTCCATTGCATCAGTATATCAGAAAATTACTTTTCTCTGATCTTGACAAGTCTACCATTGAGCATGTGCTGAGGCAACTGCGTAAATTACCCTGGAATGAATGCGAGACATATCTTTTGAAGTGCTTCATGAAGGTCTACAAAGGAAAATATGGTCAGATCCACCTCATTGCATCTCTTGCTGCTGGATTAAGTCGCTATCATGATGAGTTTGCTGTAGCTATTGTTGATGAGGTTCTTGAGGAGATTAGAGTTGGGCTGGAGTTAAATGACTACAGTATGCAGCAAAGACGCATTGCTTACATGCGATTTTTAGGGGAGCTTTACAACTATGAGCATGTAGACTCTTCTGTTATTTTTGAGACACTTTATCTCATTCTCGTCTATGGTCATGGGACATCAGAGCAAGATGTACTTGATCCACCTGAAGATTGTTTTCGCATAAGGTTGATCATTACTCTACTTGAAACTTGTGGGCATTACTTTGATCGTGGCTCTTCTAAGAGGAAACTTGATCGGTTCCTAATACACTTCCAGAGGTATATTTTAAGCAAAGGAGCACTACCTCTGGACATTGAATTTGACTTACAGGATCTGTTTGCGGACTTACGACCCAATATGGCTCGTTACACTTCTATTGAAGAAGTGAATGCAGCTCTAGTAGAACTTGAGGAACATGATCGGATAGTTTCTGCTGATAAGGCTAGTGGTGAAAAACATTCTGACAATGAGAAGTCTTCAAGTAGGACCACTTCCACTACTACTGTGGTTGGCAATGGACAGAGCATTGATAATGGTACGGAGGAAAATGGAGTGCAAGATGATGTTAATGACAGTGAGACTGATTCAGGGAGTGACACAATTGATGTAGAGGGTCATGATGATGAAGAGTTGGATGAAGAGAATCATGATGATGGCTGTGAAACTGAGGATGATGAAGATGATGGGCCTGGACCTGCTACCGATGAGGAGGATGAAGTGCATGTGAGACAAAAAGTGACGGAGGTGGACCCTCTGGAAGAGGCTGATTTCGATCAGGAGCTCAAGGCTGTAGTGCAGGAGAGTATGGAACAAAGAAGGCAAGAACTACGGGGTCGTCCTACATTGAACATGATGATTCCAATGAATGTCTTTGAGGGATCAACCAAGGATCACCACGGGAGGGGAGTTAGTGGGGAAAGTGGTGATGAGGAATTGGACGAGGATACTGGTGGAAACAAAGAGGTTCAGGTGAGAGTTCTTGTGAAGCGTGGAAACAAGCAGCAAACAAAGCAGATGTTCATCCCTCGGAATTCCTCACTGGTGCAGAGTACAAAACAGAAAGAAGCAGCCGAGCTTCAAGAGAAAGAAGACATCAAGAGGCTTGTTTTGGAGTATAATGACAGAGAAGAGGAGGAGCTTAATGGATTAGGGACCCAGCCAGCAAACTGGATGCAGAGTGTAGGTAACAAGACTGGTGGCCGTGGTAGCACTTTGGAAGGAAACAGTGGCAGGGGTAGTGGATCAAGACATCGACATCATAACTATTCTGGCAGTGGAATATATTATAGCAGAAGAAAGTGA 3561 0.4156 MDQHEDESNSKQDDEEAVARLEEIKKSVEAKMALRQSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINEEQRESLMDELRSVNLSKFVSEAVTAICDAKLRSSDIQAAVQICSLLHQRYKDFAPSLIQGLLKVFSPGKPGDESDADRNLKAMKKRSTLKLLLELFFVGVIEDGGIFINIIKDLTNGEQLKDRDAAQTNLTLLSSFARQGRIFLGLSVSGLEIHEEFFKGLNITADQKKVFRKACYSFYDASAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEGISSASGKDSSAVEPIWDDEDTRTFYECLPDLRAFVPAVLLGETEPKSSDQSAKGQDQPTEIVPESDKGQQTTHESGEISIESNALPEAESTERVKEKEEKEKSKELDREKEKEKDNDKKGENEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLAYYSRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIASPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMSNMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECETYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYSMQQRRIAYMRFLGELYNYEHVDSSVIFETLYLILVYGHGTSEQDVLDPPEDCFRIRLIITLLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLDIEFDLQDLFADLRPNMARYTSIEEVNAALVELEEHDRIVSADKASGEKHSDNEKSSSRTTSTTTVVGNGQSIDNGTEENGVQDDVNDSETDSGSDTIDVEGHDDEELDEENHDDGCETEDDEDDGPGPATDEEDEVHVRQKVTEVDPLEEADFDQELKAVVQESMEQRRQELRGRPTLNMMIPMNVFEGSTKDHHGRGVSGESGDEELDEDTGGNKEVQVRVLVKRGNKQQTKQMFIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGTQPANWMQSVGNKTGGRGSTLEGNSGRGSGSRHRHHNYSGSGIYYSRRK 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00465 1186 MobiDBLite consensus disorder prediction 898 912 - -
Vian4g00465 1186 SUPERFAMILY ARM repeat 465 659 IPR016024 -
Vian4g00465 1186 MobiDBLite consensus disorder prediction 898 1010 - -
Vian4g00465 1186 MobiDBLite consensus disorder prediction 937 987 - -
Vian4g00465 1186 SMART if4_15 56 278 IPR003890 GO:0003723|GO:0005515
Vian4g00465 1186 SMART if4_15 468 656 IPR003890 GO:0003723|GO:0005515
Vian4g00465 1186 SMART if4_15 671 872 IPR003890 GO:0003723|GO:0005515
Vian4g00465 1186 MobiDBLite consensus disorder prediction 1131 1186 - -
Vian4g00465 1186 FunFam Regulator of nonsense transcripts UPF2 426 664 - -
Vian4g00465 1186 Pfam Up-frameshift suppressor 2 988 1124 IPR007193 -
Vian4g00465 1186 FunFam Regulator of nonsense transcripts UPF2 8 318 - -
Vian4g00465 1186 Pfam MIF4G domain 471 655 IPR003890 GO:0003723|GO:0005515
Vian4g00465 1186 Pfam MIF4G domain 673 867 IPR003890 GO:0003723|GO:0005515
Vian4g00465 1186 MobiDBLite consensus disorder prediction 310 344 - -
Vian4g00465 1186 MobiDBLite consensus disorder prediction 376 411 - -
Vian4g00465 1186 Coils Coil 539 559 - -
Vian4g00465 1186 MobiDBLite consensus disorder prediction 327 341 - -
Vian4g00465 1186 MobiDBLite consensus disorder prediction 1045 1075 - -
Vian4g00465 1186 MobiDBLite consensus disorder prediction 420 459 - -
Vian4g00465 1186 Gene3D - 422 666 - -
Vian4g00465 1186 Gene3D - 667 896 - -
Vian4g00465 1186 MobiDBLite consensus disorder prediction 913 936 - -
Vian4g00465 1186 Coils Coil 420 448 - -
Vian4g00465 1186 Gene3D - 8 318 - -
Vian4g00465 1186 FunFam Regulator of nonsense transcripts UPF2 667 897 - -
Vian4g00465 1186 SUPERFAMILY ARM repeat 64 183 IPR016024 -
Vian4g00465 1186 MobiDBLite consensus disorder prediction 375 459 - -
Vian4g00465 1186 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 13 1134 IPR039762 GO:0000184
Vian4g00465 1186 Coils Coil 11 31 - -
Vian4g00465 1186 MobiDBLite consensus disorder prediction 1138 1164 - -
Vian4g00465 1186 SUPERFAMILY ARM repeat 666 891 IPR016024 -
Vian4g00465 1186 MobiDBLite consensus disorder prediction 988 1010 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00465 K14327 - gmx:100786092 2083.92