Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00460 ATGGCGGAGGAAGTTGAAGAATCGAATAATGCAGTCAGAATATTCGTGGGAGGATTGGCGGAAACAGTCAGCATCGAAGACCTTCGAAGCTTATTCTCCTCTCTTGGCTCCGTCCAAGCCGTTCAAACAATCCGAACCAAAGGTCGCAGCTTTGCCTACATTGATTTTCACTCCGACCCTAAATCCCTTTCTAAGCTCTTCAGCAAGTATAATGGGTGTCTGTGGAAGGGTGGAAGGCTGAGACTTGAGAAGGCCAAAGAAGACTATCTCACGCGGATGAAGAGAGAATGGGAGCATGACGCCCTTGATGATGCTACTCAACCGCCTCCTAGTTCTCCTAAGGAAGCCACCACACATTCTTCCAAGTCAAATACCAAACATCTCAATATTTTCTTTCCCAGATTGAGAAAGGTGAAATCCATACCATTCAGTGGAACTGGCAAGCACAAATACAGTTTCCAGAATATTAAAGTTCCTCCACTCCCTGTGCATTTTTGTGATTGTGAAGAGCATTGTAGTCCCTTTGTCACTGAAAGAGGGAGGCTATCTATTGATGGGGCAGCTGAAAGTGCTGGAATGAATGATGAAGAGATTAGCATAATGAATGCAGTGATGAATAAGCTACTTCAAAAAGAAAAGATTTCCAGTGTTGAGAGCCTTGGAAAGGAGAAGGATTTGTACAAATCACCTGATACTTTACAATCTGATGAAGGTGAAGATAGCGCAGCAGATGAAGACGATCTCATTATTAACATGGAGACGAAGAGAAATAAAACAGCTTTAATAGGGAACCAGGAGCTTGAAAGAATCCTGGAAAATCAGGAATCCTGGTTTAATAAAACAAAAATTGCTATGGAAGAACACAACAATAGTATGCCTGAAGTGGAGAGAAGGAATAATAGCAATCCCAACAAGAACAAGAAGAGGAAATCACTTCCCAAATTGGAAATGGAAAGTAATGCAGAAGTATCAACAACCCCTGGAGGCAAGGGTAATAAGCAGACTCTTCCAAATAAGGTGGGATCTGGTGCACAGCGTACTGAGCCAGAAGATGGTTTTGAGGAATTGACTAAAGTTTCATGGTCTCAAAAATCTTCATGGAAAGAACTTCTTGGTGGTGGAGGCAATACTTCATTCAGTGCTTCTATCATATTGCCAAAGTTGAACTGTAGTAAGAATCAACAAAGATCCGATGATCTGTGTGCACCTGTATCTACAGTCAGTAAAACTGAAAACATGGAAAAGGAAAGAGAATTGTGGAGCAACCCTACCAATACGCAAGTGATAAAAGAGAATGCTGATGCTCAACCTACCCATACACAAGTGACAAAAGAGCTTGCTGAAGCTGCAAATAAAGAAATGATAGAAGATGTTACCAAAAATCAGCATAATGTGGCACCGAATAAGACAGGCAGAGGAGCTTCATGGCTGCAAAAACAATCCTGGACACAAATGGTTAGTGAGAATAGCAATTCATTTAGCATTGCACATATTCTGCCTGGTATTACTTTTCCAGAGCCAAAGGCCAAGGAGCCCATTGTGGTACCTGTCATTTCCAACCATTTCAAGCATAATGGTGTAGCTAAGGGTACTATTAATGAAGCTGTGAGTAATCACGTGTATAAATCAAGGGAGACTATACAAGAAAAGAGTCAGCATATCAGTGGCAATGACGTTACTTTTGCTTCAGTAGTTGAGGAAAAGGTTGAAACAAGTCCCAGGGAAAAATCCCCTGAAAATATTGAAATAGGTGAAACGTGCTCATTTATGAGAAGTGCTGCATCTTTGAAGGAATGGGCAAAAGCTAAGGCGGCTATTAGTGGATCACTCAAAAGAAAAAGTGGTGAGAAGTAA 1854 0.4137 MAEEVEESNNAVRIFVGGLAETVSIEDLRSLFSSLGSVQAVQTIRTKGRSFAYIDFHSDPKSLSKLFSKYNGCLWKGGRLRLEKAKEDYLTRMKREWEHDALDDATQPPPSSPKEATTHSSKSNTKHLNIFFPRLRKVKSIPFSGTGKHKYSFQNIKVPPLPVHFCDCEEHCSPFVTERGRLSIDGAAESAGMNDEEISIMNAVMNKLLQKEKISSVESLGKEKDLYKSPDTLQSDEGEDSAADEDDLIINMETKRNKTALIGNQELERILENQESWFNKTKIAMEEHNNSMPEVERRNNSNPNKNKKRKSLPKLEMESNAEVSTTPGGKGNKQTLPNKVGSGAQRTEPEDGFEELTKVSWSQKSSWKELLGGGGNTSFSASIILPKLNCSKNQQRSDDLCAPVSTVSKTENMEKERELWSNPTNTQVIKENADAQPTHTQVTKELAEAANKEMIEDVTKNQHNVAPNKTGRGASWLQKQSWTQMVSENSNSFSIAHILPGITFPEPKAKEPIVVPVISNHFKHNGVAKGTINEAVSNHVYKSRETIQEKSQHISGNDVTFASVVEEKVETSPREKSPENIEIGETCSFMRSAASLKEWAKAKAAISGSLKRKSGEK 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00460 617 Gene3D - 2 91 IPR012677 -
Vian4g00460 617 PANTHER TRANSCRIPTIONAL REGULATOR 7 616 - -
Vian4g00460 617 CDD RRM_NOL8 13 86 IPR034138 -
Vian4g00460 617 SMART rrm1_1 13 83 IPR000504 GO:0003723
Vian4g00460 617 MobiDBLite consensus disorder prediction 225 249 - -
Vian4g00460 617 MobiDBLite consensus disorder prediction 288 356 - -
Vian4g00460 617 MobiDBLite consensus disorder prediction 318 342 - -
Vian4g00460 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 59 IPR000504 GO:0003723
Vian4g00460 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 87 IPR000504 GO:0003723
Vian4g00460 617 MobiDBLite consensus disorder prediction 101 123 - -
Vian4g00460 617 SUPERFAMILY RNA-binding domain, RBD 5 86 IPR035979 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00460 - - vum:124830427 1151.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00460 4 5409695 5412896 Vian4g00460 4 5409695 5412896 ECH