Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00445 ATGAACTTCAGGTTCCAGAATCTGTTGGGAGCCCCCTACAGAGGGGGCAACGCGGTAATTTCAAACAACACCCTGCTGCTCTCCCCTGTGGGTAACCGCGTCGCCGTCACCGACCTCCTCAAGTCCGAAACCTCCACCCTCCCCATCCAGTCCTCCTCCAATGTTGCCAGCATCGCTGTCTCCCCTGACGCCACATTCCTCCTCGCCGTCGACGACCGCAATCGCTGCCTCTTCATTAACCTACGCCGCCGCGTCCTCCTCCACCGCATCTCCTTCAAGGACCGCGTTGCCGCCGTAGAATTCAGCCCTGACGGGGCTCTCATCGCCGTCGCCACCGGAAAGCTTGTCCAGATCTGGCGCTCTCCGGCCTTCCGCCGCGAGTACTTCCCCTTCGAGCTCGTACGCACCTTCGCCGAGTTCGACGCGAAAGTAACCACCCTCGATTGGAGCCCGGACTCCAAGTACCTCATCGTCGGGTCCAAGGATTTAACCGCGAGAATCTTGTGCTTGAAGAAATTGAATAGTGGTGGAAAGAAAAAACCCTTTTTGCTCCTAGGGCACAGGGATTCGGTTGTTGGTTCGTTCTTCGGTGTCAATTCGAAAACTAGTAGAGTTTGTAAGGCTTATACGATTACGAGGGATTGTTACTTATTTAGCTGGGGTTTTACTTCTGATAGTGGTGGTGAGGCTGAGGGTTCGGAGCCGCCCTCGCCAGGGACGCCGGAGAGGGACGCGGAAAGGAATTTGGAGGTTGTTGAGAATGATGGTGTGAAGAAGAGGAAGAAAATTGATGTTGAGGATGGTGATGAGGGTTACCTGAGTAAGGGAAAGTGGGAGTTATTGAGGAAGGATGGGTTTATGCAGGGATGGGCAAAAGTGACAGCATGTGATTATCATAGGGGGCTAGATATGGTGGTTGTTGGATTTTCTAATGGTGTGTTTGGGTTGTATCAGATGCCAGATTTTGTGTGCATTCATTTGCTATCTATTTCAAGGGAGAAAATTACCACCGCTGTGTTTAACGAGCTTGGGAACTGGCTGACATTTGGCTGCGCCAAATTGGGGCAGCTGCTGGTGTGGGAGTGGCGTTCTGAGAGCTACATTTTGAAGCAGCAGGGTCATTACTTTGATGTTAACTGCGTTGCCTATTCGGCAGACTCGCAGCTCCTTGCCACTGGAGCAGATGATAATAAAGTGAAGGTGTGGACACTTTCGTCAGGATTTTGCTTTGTTACATTTTCGGAGCACACTAATTCTGTTACGGCTTTACATTTTATGGCAAGTAACAATTGCCTTCTTAGTGCATCTCTTGACGGGACCATTCGTGCATGGGATTTATTACGCTACCGGAATTTTAGGACCTTTACAACCCCTTCTTCTAGACAGTTTGTTTCCTTGACAGCTGATCAAAGTGGTGAAGTGATATGTGCAGGCACTTCAGATTCCTTTGAGATTTTTGTTTGGTCAATGAGAACGGGACGCTTGCTGGATGTGCTTAGTGGTCACGAAGCTCCTGTTCATGGGCTGGTCTTTTCTCCTACAAATGCTGTCTTGGCTTCATCATCATATGATAAATCTGTTCGGCTGTGGGATGTCTTTGATGGAAAAGGAGCAGTTGAAACATTTCCTCACACTCATGATGTTCTTACAGTAGTGTATCGTCCAGATGGAAGGCAGTTAGCTTGCAGCACATTAGATGGGCAAATTCATTTTTGGGACCCAGTAGATGGTTTGTTGATGTACACTATAGAAGGTTCTAGAGATATTGCTGGTGGGCGTCTTATGACTGACCGTAGGTCCGCAGCTAACTCAACTTCAGGGAAGTTCTTTACAACTTTGTGTTATTCAGCTGATGGAAGCTACATATTAGCTGGGGGAAGTAGCAGATACATCTGCATGTATGATGTTGCAGATCAGGTTTTACTTCGACGTTTCCAGATAACTCACAATCTCTCATTAGATGGAGTGCTTGACATTTTAAACTCAAAAAATATGACAGATGCTGGCCCTCTGGATTTGATTGATGATGACAACAGTGACATTGAAGAAGGCATTGAGAAACAAACTCGAGGGAAACTAGGATTTAACTTGCCAGGATCTTTGCCTAACCGTGGAAGGCCTATTATTCAGACAAAGTGCCTGAGGATTGCACCTACAGGGCGTAGTTTTGTTGCAGCAACAACTGAGGGAGTTTTGGTTTATTCTGTTGATGAATCATTCATATTTGATCCAACTGACCTTGACATAAATGTTACACCAGAGGCTGTTGAAGAAGCTCTTCGTGAAAATCAACCAAGTAAAGCCTTGATCCTTAGCCTTCGCTTGAATGAGGATTCCTTCATTAAAAAATGTATATTTGCGGTTAGTCCAGCAGATATTCCTGCAGTTGCCACGTCAATCCCTTACAAATATCTCCAACGATTAGTGGAGGCACTTGCAGATCTCTTAGAAAACTGCCCACATTTGGAATTTATACTTAGATGGTGTCAGGAGCTCTGCAAGGCCCATGGGAATTCTATTCAGCAGAACTCTCGCAATCTGTTACCATCATTAAAATCTTTGCAGAAAGCAATCACTAAAATTCATCAGGATCTATCAGATACATGTTCCTCCAACGAATATATGCTGCGGTATTTATGCTCTTCTGGTGCCAAAAAATGA 2661 0.4649 MNFRFQNLLGAPYRGGNAVISNNTLLLSPVGNRVAVTDLLKSETSTLPIQSSSNVASIAVSPDATFLLAVDDRNRCLFINLRRRVLLHRISFKDRVAAVEFSPDGALIAVATGKLVQIWRSPAFRREYFPFELVRTFAEFDAKVTTLDWSPDSKYLIVGSKDLTARILCLKKLNSGGKKKPFLLLGHRDSVVGSFFGVNSKTSRVCKAYTITRDCYLFSWGFTSDSGGEAEGSEPPSPGTPERDAERNLEVVENDGVKKRKKIDVEDGDEGYLSKGKWELLRKDGFMQGWAKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCVAYSADSQLLATGADDNKVKVWTLSSGFCFVTFSEHTNSVTALHFMASNNCLLSASLDGTIRAWDLLRYRNFRTFTTPSSRQFVSLTADQSGEVICAGTSDSFEIFVWSMRTGRLLDVLSGHEAPVHGLVFSPTNAVLASSSYDKSVRLWDVFDGKGAVETFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPVDGLLMYTIEGSRDIAGGRLMTDRRSAANSTSGKFFTTLCYSADGSYILAGGSSRYICMYDVADQVLLRRFQITHNLSLDGVLDILNSKNMTDAGPLDLIDDDNSDIEEGIEKQTRGKLGFNLPGSLPNRGRPIIQTKCLRIAPTGRSFVAATTEGVLVYSVDESFIFDPTDLDINVTPEAVEEALRENQPSKALILSLRLNEDSFIKKCIFAVSPADIPAVATSIPYKYLQRLVEALADLLENCPHLEFILRWCQELCKAHGNSIQQNSRNLLPSLKSLQKAITKIHQDLSDTCSSNEYMLRYLCSSGAKK 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00445 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 573 IPR001680 GO:0005515
Vian4g00445 886 SMART WD40_4 83 120 IPR001680 GO:0005515
Vian4g00445 886 SMART WD40_4 448 489 IPR001680 GO:0005515
Vian4g00445 886 SMART WD40_4 40 80 IPR001680 GO:0005515
Vian4g00445 886 SMART WD40_4 364 403 IPR001680 GO:0005515
Vian4g00445 886 SMART WD40_4 535 573 IPR001680 GO:0005515
Vian4g00445 886 SMART WD40_4 130 169 IPR001680 GO:0005515
Vian4g00445 886 SMART WD40_4 492 531 IPR001680 GO:0005515
Vian4g00445 886 SMART WD40_4 321 361 IPR001680 GO:0005515
Vian4g00445 886 SMART WD40_4 596 635 IPR001680 GO:0005515
Vian4g00445 886 SMART WD40_4 406 445 IPR001680 GO:0005515
Vian4g00445 886 PANTHER WD40 REPEAT PROTEIN 1 885 IPR027145 -
Vian4g00445 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 573 - -
Vian4g00445 886 Gene3D - 288 483 IPR015943 GO:0005515
Vian4g00445 886 ProSitePatterns Trp-Asp (WD) repeats signature. 518 532 IPR019775 -
Vian4g00445 886 PRINTS G protein beta WD-40 repeat signature 518 532 IPR020472 -
Vian4g00445 886 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Vian4g00445 886 PRINTS G protein beta WD-40 repeat signature 390 404 IPR020472 -
Vian4g00445 886 MobiDBLite consensus disorder prediction 227 247 - -
Vian4g00445 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 371 407 - -
Vian4g00445 886 Pfam Dip2/Utp12 Family 776 881 IPR007148 -
Vian4g00445 886 SUPERFAMILY Nitrous oxide reductase, N-terminal domain 543 650 IPR011045 -
Vian4g00445 886 Gene3D - 484 667 IPR015943 GO:0005515
Vian4g00445 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515
Vian4g00445 886 Gene3D - 21 229 IPR015943 GO:0005515
Vian4g00445 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 413 446 - -
Vian4g00445 886 SUPERFAMILY DPP6 N-terminal domain-like 8 225 - -
Vian4g00445 886 FunFam Periodic tryptophan protein 2 279 482 - -
Vian4g00445 886 Pfam WD domain, G-beta repeat 545 573 IPR001680 GO:0005515
Vian4g00445 886 Pfam WD domain, G-beta repeat 409 445 IPR001680 GO:0005515
Vian4g00445 886 Pfam WD domain, G-beta repeat 494 531 IPR001680 GO:0005515
Vian4g00445 886 Pfam WD domain, G-beta repeat 134 167 IPR001680 GO:0005515
Vian4g00445 886 Pfam WD domain, G-beta repeat 372 402 IPR001680 GO:0005515
Vian4g00445 886 FunFam Periodic tryptophan protein 2 22 248 - -
Vian4g00445 886 ProSitePatterns Trp-Asp (WD) repeats signature. 432 446 IPR019775 -
Vian4g00445 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 532 - -
Vian4g00445 886 CDD WD40 324 627 - -
Vian4g00445 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 413 454 IPR001680 GO:0005515
Vian4g00445 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 412 IPR001680 GO:0005515
Vian4g00445 886 SUPERFAMILY WD40 repeat-like 127 578 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00445 Vian-Chr4 5178632 5184236 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00445 470 646 Miscellaneous Gene Families AT5G08390 19.774 4.35e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00445 K14558 - gmx:100526905 1657.88