Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00444 ATGGATGTGTCGTCGGAGCCTTCTGGCGAAGATGTGGCGCCGGAAAAGCCTCTGAGTTCCTCGAAGAAGAGCGTTCCAGAAGTTTCCAAGAGAGCTGCGAAAACCGCCGCAGAATCTGGTGGTGCGGCGAAAAGGAAAGTTGAACCGCGAACCGGTTCGAGTGCCGGTGCCGGCACGGTTGCGGCGAGGAGATCGGGTTTGATTGGCGGTTCCGCGAGTTCGGTTTCTGCGCTGAGACGGAACAGTACCGGAGGATTGTCTCAGAAGTCGTCGATCTCTGTTGCAGGGAGAAAAGCCAGTGCTGAGTCTGTTGGTGGAGGTAAGAGCAGCGTTTCGTCGGCGAGTGAACCTATCCGAAAGTCTCTGCCGGAGCTCCGGCGTAATTCTGTAACTTCTTCACGGGCCGGCGCTGCGGCGAATCCGGTTGCGGCCTCGCCGGTTGGCTCGGCTTCTAGGACTTCTGGTACGAGTAAAGCGGAGGTTGCGAGGAAGCCGGTCAGTAAATTGGCATTGTCGGGTTCAGGTTTGGCTTCGTCTGTTTCGAGAAGGATAAGTTCTTCGTCCGTGGATAGCACTGCCAGCAGTGGAGGTTCTGCTCGAAGGACTGTTTCCAGGGTTTCTTCGCCGACGGTTTCGAGCGGGTTGAAGGCTGGCTCTCTGTCAACGTCGCAGGATAGAGCTTCTGCACTTTCTGGAAGGAGAAAGGGAGGCACTCCTGATAGCCGGGATTCGAAGTTTATCGCGCTTCCGCATGTTGAGATTAAGGCCAATGATGACTTGAGACTGGATCTAAGGGGACACAGAGTTCGCAGTCTCACTGCCAGTGGATTAAACTTATCCTCAAACTTAGAGTTTGTTTATCTCCGAGACAATCTCTTGTCTACACTGGAAGGAGTAGAAATATTGACGAGAGTGAAGGTTCTTGATTTAAGTTTTAATGATTTTAAGGGGCCTGGATTTGAGCCTCTTGAGAATTGCAGAGTACTGCAGCAACTCTATCTTGCTGGAAATCAAATTACATCATTGGCAAGTCTCCCTCAACTTCCTAATTTGGAGGCAATAGCTCAGAATAAGTTGAAATCTCTTGCTATGGCTAGCCAACCTCGACTGCAGGTCTTAGCTGCCAGCAAAAACAAAATTTCTACTCTTAAGGGTTTCCCGTATTTACCTGTTCTTGAGCATTTGCGAGTGGAGGAGAATCCTATACTTAAGATGCTTCATTTGGAAGCAGCGTCAATATTACTAGTTGGACCTACATTGAAAAAGTACAATGACAGAGATCTCTCTCGTGAGGAAGTGGCTCTAGCAAAGCGTTATCCTGCACATACGGCTTTATGCATTAGAGATGGTTGGGATTTCAGTCGCCCTGAGCAAGCTGCAGACTCAACTTTCCGCTTTTTAGTTGAGAAATGGAAAGACCATATTCCTCCTGGTTTTCTCCTCAAAGAAGCCTCCATAGATAAACCTGTGGAAGAAGATGTGTGTCGTTGTCACTTCGCCATTATTCCTGATGGTGCAGCTAGTACAGGCCCCCCATTAGATTTAAAATATCAATGGTTTTGTGGTGATTTATCTCTTTCAAATTTTGCCCCTATTCCGGATGCTACCAGTGAGGTTTACTGGCCGAAGCATGATGACATTGGAAAAGTTCTGAAGGTGGAATGCACCCTCACTCTAGAAGAAATGACATATCCTCCTATATTTGCCATCTCACCTCGTATTTCGCGAGGAAATGGAATTCCAAAGGTTGTAGATCTTGAAGTACATGGGGAACTGGTAGAAGGAAGTATCATCAGGGGTTGTGCTAAGGTTGCTTGGTGTGGTGGAACTCCAGGAAAAGGTGTTGCAAGTTGGTTACGGAGAAAGTGGAATAGCAGTCCTGTGGTTATTGTTGGGGCAGAAGAGGAAGAGTATAAGTTAACCATTGATGATGTTGATTCAAGTTTAGTTTTCATGTACACACCAGTAACAGAAGAAGGTGCAAAAGGAGAACCTCAATACAAATATACAGATTTTGTAAAAGCTGCTGCTCCTTCTGTCAGTAATGTGAAAATAGTTGGAGATGCTGTTGAGGGAAGTACCATCAAAGGAGTCGGAGATTACTTTGGTGGAAGGGAGGGTCCGAGCAAGTTTGAATGGTTGCGGGAGAGCATGGATTCTGGAGGCTTGTTGTTAGTGTCAGCAGGAACATCTGAGTATACCTTGACCAAAGAGGATGTTGGTAGTTGTGTGGCGTTTGTGTACATACCCATTAATTTTGAGGGCCAGGAAGGAAAATCTATGTCTGTAATGTCTTCTGTTGTGAAACAAGCACCTCCAAAGGTAACAGATGTCAAAATAATTGGTGAATTACGAGAGAATAGCAAGGTCACTGCAACTGGTATTGTAACTGGAGGAACGGAAGGATCTAGCAGAGTTCAGTGGTATAAAACACATTCGTCAACTTTGGATGAAAACACTCTTGAAGCATTAAGTACTTCTAAAATTGCCAAAGTAGGTTTGGGTTTTGTTCTCTTTTTTGGGAGATGGAATCCTATAGTTACGCAAGTACAGTGCACTATTCCCCCTTATAAATCTAAACCAGTGTTTTTAATATCTGATAAAGCAGTGGAGACTCTTCCCCCAAGCTTGAATTTCTTATCTATCATTGGGGATTACAATGAAGATGGAATTTTGACTGCTTCATATGGATATGTTGGAGGTCATGAAGGAAAGAGTATATATAGTTGGTATATTCATGAGTCCCAACCTTGTGATTCAGGTTCTCGGATACCAGGGGTTTCGGGACTGCAGTACCGTATCACCAAAGAAGGGATTGGAAAATTCATCTCATTCCAGTGTACTCCAGTACGGGATGATGGTGTTGTTGGTGACACAAGAATTTGCATGGGCCAGGAGCGCATTCGCCCTGGAAGCCCAAGATTGCTTTCTTTACACATAATTGGAAATGCTGTTGAAGGAACAATTCTAAGAATTGAAAAAAAGTATTGGGGTGGTGAAGAGGGAGATTCAGTTTACCGCTGGCTGAGGACCACTCCTGATGGCACAAAAAAAGAAATTGCGGGTGCCACTGATGCATCCTATATGCCCTCAATTGATGACATTGGCTCCTTTATTTCTGTTTCATGCGAGCCTGTTCGAAGTGATTGGGCTCGTGGACCTATGGTTCTGTCTGAACAAATTGGGCCAATAGTACCTGGTCCCCCAACTTGTCATTCCCTGGAATTTTTGGGATCAATGATAGAAGGGCAGCACTTAAGCTTTAATGCTGTGTATACTGGAGGGGAGCAAGGAGATTGTACCTATGAGTGGTTTAGGGTAAAAGACAATAGTATTCGAGATAGAATAAGTACCAATGACTTTTTGGATTTGACTCTTGAGGATGTTGGTGCGTGCATTGAAATAATCTATACTCCTGTGCGCAAAGATGGAATCAAAGGCAGCCCAAAGCACATTGTGTCTGATCTGATTTCTCCTGCGGATCCTAAGGGAATAGAACTCTTAATTCCTGATTGTTGTGAAGACAGAGAGCTGATGCCACTGAGAAAATATTTTGGTGGACATGAGGGGATTGGAAAGTATATTTGGTATCGTGCAAAGCGTAAACTTGAAGGATCTGAACTGCTAGATATATCTAATGCCTCTGATGTTGAAATATCTGGGACAGAGCTAATGTATAAACCGCTGCTTAAAGATGTTGCAGCTTACTTGGCTTTGTATTGGGTGCCTACTCGAGAAGATGGAAAATGTGGAGAGCCATTGGTTGCAATTAGCAGTGCCCCAGTTTCCCCTGGTATCTCTATGATTCTTTGCTGGAAGTTCATTGCAGTATCTGATGATATCTTTTCATCACATGCTCCTCCAATAGTTTCTAATGTACTCGTGAAAGAGTTGTCAACGGGAATTTATTCTGGAGAAGGTGAATATTTTGGTGGACATGAAGGAGAAAGTCTCTTTAGCTGGTATAGAGAAAATAATGAGGGAACCATTGAACTAGTTAATGGAGCAAATTCTAAAATCTATGAAGTTACTGATTCGGATTACAATTTTCGATTGTTGTTTGGATACACACCTATTCGTTCAGATTTGGTTGTGGGGGAGCTTGTTTTATCTGCTCCTACTAATATTGTGTTCCCAGAGCTTCCATGTGTCGAGATGCTTGCTCTGACTGGCAAGGCAGTTGAAGGTGATGTTCTTACTGCTGTTGAAGTGATTCCAAATAGTGAGACACAGCGACATGTTTGGAGCAAGTACAAGAAAGATATAAGATATCAATGGTTTTGTTCGTCTGAAGTTGGAGACAGTCTTTCGTACGATCCATTACCTAATCAGAATTCTTGCTCCTATAAGGTGCGGCTAGAAGATATTGGTCATCATTTAAAATGTGAGTGTATCGTAAATGATGTGTTTGGAAGGTCTGGTGAGGCAGTATGCATTGAGACAACACCTGTGTTGCCAGGAATTCCTAGAATACACAAGCTGGAGATTGAAGGAAGGGGATTTCATACCAATCTCTATGCTGTTCATGGCATTTACAGTGGTGGAAAGGAAGGGAAAAGTAGAGTTCAGTGGCTTAGATCAATGGTTGGAAGTCCTGACCTGATCTCCATACCAGGAGAAACTGGCAGAATGTATGAAGCGAATGTTGATGATGTTGGTTATAGGCTGGTGGCCATCTATACTCCTGTAAGAGAGGATGCAGTAGAGGGGCAATCAATTTCTGTATCCACGGAGCCAATAGCGGTTGAGCCCGATGTTCTTAAAGAAGTGAAGCACAACCTTGAACTTGGATCAGTGAAGTTTGAGGTATTATGCGACAAAGAGCAAAACTCAAAAAAGATTTCATCAGTGGGCACATACGAGAGACGTATCCTTGAAATTAACAGGAAAAGGGTAAAGGTGGTAAAGCCTGCCACGAAGACTTCTTTTCCAACTACGGAACTTCGTGGTAGTTATGCTCCTCCCTTTCATGTGGAGCTTTTCAGGAATGATCAACACCGTCTTAGGCTTGTAGTGGACAGTGAGAATGAAGCAGACTTGATGGTGCACTCCCGACACATTCGGGATGTTATTGTTCTTGTGATTCGAGGACTTGCTCAGCGATTCAATAGTACTTCCCTCAATTCCCTTCTCAAGATAGACACATAA 5148 0.4423 MDVSSEPSGEDVAPEKPLSSSKKSVPEVSKRAAKTAAESGGAAKRKVEPRTGSSAGAGTVAARRSGLIGGSASSVSALRRNSTGGLSQKSSISVAGRKASAESVGGGKSSVSSASEPIRKSLPELRRNSVTSSRAGAAANPVAASPVGSASRTSGTSKAEVARKPVSKLALSGSGLASSVSRRISSSSVDSTASSGGSARRTVSRVSSPTVSSGLKAGSLSTSQDRASALSGRRKGGTPDSRDSKFIALPHVEIKANDDLRLDLRGHRVRSLTASGLNLSSNLEFVYLRDNLLSTLEGVEILTRVKVLDLSFNDFKGPGFEPLENCRVLQQLYLAGNQITSLASLPQLPNLEAIAQNKLKSLAMASQPRLQVLAASKNKISTLKGFPYLPVLEHLRVEENPILKMLHLEAASILLVGPTLKKYNDRDLSREEVALAKRYPAHTALCIRDGWDFSRPEQAADSTFRFLVEKWKDHIPPGFLLKEASIDKPVEEDVCRCHFAIIPDGAASTGPPLDLKYQWFCGDLSLSNFAPIPDATSEVYWPKHDDIGKVLKVECTLTLEEMTYPPIFAISPRISRGNGIPKVVDLEVHGELVEGSIIRGCAKVAWCGGTPGKGVASWLRRKWNSSPVVIVGAEEEEYKLTIDDVDSSLVFMYTPVTEEGAKGEPQYKYTDFVKAAAPSVSNVKIVGDAVEGSTIKGVGDYFGGREGPSKFEWLRESMDSGGLLLVSAGTSEYTLTKEDVGSCVAFVYIPINFEGQEGKSMSVMSSVVKQAPPKVTDVKIIGELRENSKVTATGIVTGGTEGSSRVQWYKTHSSTLDENTLEALSTSKIAKVGLGFVLFFGRWNPIVTQVQCTIPPYKSKPVFLISDKAVETLPPSLNFLSIIGDYNEDGILTASYGYVGGHEGKSIYSWYIHESQPCDSGSRIPGVSGLQYRITKEGIGKFISFQCTPVRDDGVVGDTRICMGQERIRPGSPRLLSLHIIGNAVEGTILRIEKKYWGGEEGDSVYRWLRTTPDGTKKEIAGATDASYMPSIDDIGSFISVSCEPVRSDWARGPMVLSEQIGPIVPGPPTCHSLEFLGSMIEGQHLSFNAVYTGGEQGDCTYEWFRVKDNSIRDRISTNDFLDLTLEDVGACIEIIYTPVRKDGIKGSPKHIVSDLISPADPKGIELLIPDCCEDRELMPLRKYFGGHEGIGKYIWYRAKRKLEGSELLDISNASDVEISGTELMYKPLLKDVAAYLALYWVPTREDGKCGEPLVAISSAPVSPGISMILCWKFIAVSDDIFSSHAPPIVSNVLVKELSTGIYSGEGEYFGGHEGESLFSWYRENNEGTIELVNGANSKIYEVTDSDYNFRLLFGYTPIRSDLVVGELVLSAPTNIVFPELPCVEMLALTGKAVEGDVLTAVEVIPNSETQRHVWSKYKKDIRYQWFCSSEVGDSLSYDPLPNQNSCSYKVRLEDIGHHLKCECIVNDVFGRSGEAVCIETTPVLPGIPRIHKLEIEGRGFHTNLYAVHGIYSGGKEGKSRVQWLRSMVGSPDLISIPGETGRMYEANVDDVGYRLVAIYTPVREDAVEGQSISVSTEPIAVEPDVLKEVKHNLELGSVKFEVLCDKEQNSKKISSVGTYERRILEINRKRVKVVKPATKTSFPTTELRGSYAPPFHVELFRNDQHRLRLVVDSENEADLMVHSRHIRDVIVLVIRGLAQRFNSTSLNSLLKIDT 1715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00444 1715 MobiDBLite consensus disorder prediction 146 160 - -
Vian4g00444 1715 SUPERFAMILY Outer arm dynein light chain 1 261 410 - -
Vian4g00444 1715 Gene3D Ribonuclease Inhibitor 249 357 IPR032675 -
Vian4g00444 1715 ProSiteProfiles Leucine-rich repeat profile. 328 349 IPR001611 GO:0005515
Vian4g00444 1715 PANTHER EXPRESSED PROTEIN 652 762 - -
Vian4g00444 1715 MobiDBLite consensus disorder prediction 69 97 - -
Vian4g00444 1715 MobiDBLite consensus disorder prediction 181 229 - -
Vian4g00444 1715 FunFam 187-kDa microtubule-associated protein AIR9 974 1057 - -
Vian4g00444 1715 Gene3D Ribonuclease Inhibitor 358 434 IPR032675 -
Vian4g00444 1715 ProSiteProfiles Leucine-rich repeat profile. 282 303 IPR001611 GO:0005515
Vian4g00444 1715 MobiDBLite consensus disorder prediction 181 244 - -
Vian4g00444 1715 FunFam 187-kDa microtubule-associated protein AIR9 318 444 - -
Vian4g00444 1715 MobiDBLite consensus disorder prediction 1 164 - -
Vian4g00444 1715 FunFam 187-kDa microtubule-associated protein AIR9 isoform X2 1382 1477 - -
Vian4g00444 1715 Gene3D - 974 1052 - -
Vian4g00444 1715 Gene3D - 502 567 - -
Vian4g00444 1715 Gene3D - 1382 1477 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00444 - - pvu:PHAVU_009G217700g 2955.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00444 4 5133767 5168154 Vian4g00444 4 5133767 5168154 ECH