Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00417 ATGGCTTTGAAGTGTCTGCTGGTTGTTATGTGTGTTTGGGCTTGGTTAGGATCGTTGACTTTTGCAACTTCTGATGATGGGTTGATGAGGGTTGGTCTAAAAAGGAGGAATTTAGACTTTCAGAGTCTTAAAGATGCAAGAATCAAAGAGTTCGTTCGTCCTACTGATTTAGGGGGTGATCAAAAAAATTGTTGTGATGAAGATATAATATATCTTAAGAATTATGTTGATGCACAATATTTTGGGGAGATTAGTATTGGTTCACCCCCTCAATACTTCAATGTTGTGTTTGACACTGGCAGCTCAAATCTTTGGGTTCCATCTTCAAAATGCATCTTCTCTATCGCTTGCTATTTTCATTCCAAGTATAGGTCGAAGATATCTAGCACCTATACCGAAATTGGGACGCCTTGCAGTATCCCTTATGGCCAAGGATCTATTTATGGATTCTTCAGCCAAGATAATGTACAAGTTGGAGATGTCATCATCAAAGATCAAGAATTTGCGGAGATTACAAGAGAGGGATCATTCACACTTTCTGCACTTCCATTTGATGGCATACTTGGACTCGGGTTCCTGGATGCTGCAATTGGAAAAGTCACACCAGTTTGGTATAATATGATAGAACAAGAGCAAATATGCCACCAAATTTTCTCTCTTTGGCTAAATCAAGATCCAACAGAAGAAATGGGGGGTGAAATTGTCTTTGGTGGTATTGACTATAGGCATTTTAGAGGTGAACACACATATGTTCCCCTTTCTCAAAAGGGTTATTGGCAGATTGATGTGGGAGATGTTCTAGTTGCAAGTAACTCAACAGGGTTGTGTGAGGGTGGCTGTGCTGCAATTATAGACTCAGGGACATCTCTAATTGCTGGTCCAACTAGTGTTGTGACTCAAATTAACCATGCCATTGGAGCAGAAGGGTATGTTAGTTTTGAGTGTAAAAGCATTCTCCATAACTATGGGGATTCAATATGGGCATCCTTGATTGCTGGGTTAAATCCAGAACTTGTATGCAGTGACATTGGACTCTGTTCAAACAACGGATTTAACACAATGGATGATGTTATTGAAACAGTGGTGCATAATGAAAGTTGGAATGGATCACCAATAAGGGAGAGCCCCTTTTGTTCCTTTTGCAATATGATTGTCCTTTGGATCCAAGTCCAGATTAAGCAAAGCAATGTGAAAGAAAAAGTATTTAAATATGTGGATGAGCTGTGTGAGAAGCTTCCAAATCCCCCGGGACATTCATTTATAAACTGCAATAGTATTTCTTCCATGCCACACATCACATTCACGATTGGAAACAAATCTTTTCCCCTCTCTCCAGAACAGTATGTACTTCAATTTGAAGAAGGCTGTTCTACTGTCTGCTATGGTGGTTTTGTTGCTATAGATGTTCCTCCTCCACAGGGTCCCCTCTGGGTTCTTGGAAATATATTCATGGGGGCATATCATACAGTATTTGACTATGGAAATCTCCGTATAGGATTTGCAGAAGCTGCATAG 1515 0.4007 MALKCLLVVMCVWAWLGSLTFATSDDGLMRVGLKRRNLDFQSLKDARIKEFVRPTDLGGDQKNCCDEDIIYLKNYVDAQYFGEISIGSPPQYFNVVFDTGSSNLWVPSSKCIFSIACYFHSKYRSKISSTYTEIGTPCSIPYGQGSIYGFFSQDNVQVGDVIIKDQEFAEITREGSFTLSALPFDGILGLGFLDAAIGKVTPVWYNMIEQEQICHQIFSLWLNQDPTEEMGGEIVFGGIDYRHFRGEHTYVPLSQKGYWQIDVGDVLVASNSTGLCEGGCAAIIDSGTSLIAGPTSVVTQINHAIGAEGYVSFECKSILHNYGDSIWASLIAGLNPELVCSDIGLCSNNGFNTMDDVIETVVHNESWNGSPIRESPFCSFCNMIVLWIQVQIKQSNVKEKVFKYVDELCEKLPNPPGHSFINCNSISSMPHITFTIGNKSFPLSPEQYVLQFEEGCSTVCYGGFVAIDVPPPQGPLWVLGNIFMGAYHTVFDYGNLRIGFAEAA 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00417 504 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 282 293 IPR001969 GO:0004190|GO:0006508
Vian4g00417 504 ProSiteProfiles Saposin B type domain profile. 310 350 IPR008139 -
Vian4g00417 504 SUPERFAMILY Saposin 312 413 IPR011001 -
Vian4g00417 504 Pfam Eukaryotic aspartyl protease 79 503 IPR033121 -
Vian4g00417 504 Pfam Saposin-like type B, region 2 314 346 IPR008138 -
Vian4g00417 504 FunFam Lysosomal aspartic protease 66 308 - -
Vian4g00417 504 ProSiteProfiles Peptidase family A1 domain profile. 80 501 IPR033121 -
Vian4g00417 504 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 95 106 IPR001969 GO:0004190|GO:0006508
Vian4g00417 504 Pfam Saposin-like type B, region 1 376 413 IPR007856 GO:0006629
Vian4g00417 504 Gene3D Acid Proteases 239 504 IPR021109 -
Vian4g00417 504 ProSiteProfiles Saposin B type domain profile. 374 415 IPR008139 -
Vian4g00417 504 Gene3D Acid Proteases 29 238 IPR021109 -
Vian4g00417 504 SUPERFAMILY Acid proteases 27 503 IPR021109 -
Vian4g00417 504 Gene3D - 310 413 - -
Vian4g00417 504 PRINTS Pepsin (A1) aspartic protease family signature 232 245 IPR001461 GO:0004190|GO:0006508
Vian4g00417 504 PRINTS Pepsin (A1) aspartic protease family signature 86 106 IPR001461 GO:0004190|GO:0006508
Vian4g00417 504 PRINTS Pepsin (A1) aspartic protease family signature 282 293 IPR001461 GO:0004190|GO:0006508
Vian4g00417 504 PRINTS Pepsin (A1) aspartic protease family signature 477 492 IPR001461 GO:0004190|GO:0006508
Vian4g00417 504 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 14 502 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00417 Vian-Chr4 4770924 4774139 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00417 K08245 - gmx:100500551 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00417 4 4770924 4774139 Vian4g00417 4 4770924 4774139 ECH