Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00387 ATGGCGCATCATCCTTTGACGCACTCTCACTCTTTCCGCGAGAGGATTGATGAAACTCTCTCGGGTAACAGGAATGAAATTTTGGCCCTTCTGTCAAGGCTTGAAGCCAAGGGCAAGGGAATCCTGCAACACCACCAGGTCATTGCAGAGTTTGAAGAAATCCCTGAGGAGAACAGGAAGAAGCTGCAAGATGGAGCCTTTGGAGAAGTTTTGAGATCTACACAGGAAGCCATAGTGCTGCCACCTTTTGTTGCTCTGGCTGTTCGACCAAGGCCTGGTGTTTGGGAGTATCTACGTGTGAATTTGCACATGCTTGTCGTTGATGAGCTACGTCCTGCTGAGTATCTGCGTTTCAAGGAGGAACTTGTTGAGGGAACTGCTAACGGGAACTTTGTGCTTGAGTTGGACTTTGAACCATTTAATGCCTCTTTCCCTCGTCCAACTCTGAACAAGTCCATTGGGAATGGCGTGGAGTTCCTCAACCGCCATCTTTCAGCCAAACTCTTCCATGACAAGGAGAGCATGCAGCCACTGCTTGAATTCCTCAGGCTTCACAGTTACAAGGGCACGACTATGATGCTGAATGACAAAGTTCAGAACCTGAATTCTCTCCAACATGTTTTGAGAAAAGCAGAAGAGTATCTAACTTCTGTTGCTCCTGCAACGCCCTACTCAGAATTTGAAAGCAGATTCCAGGAGATTGGTTTGGAGAGGGGATGGGGTGACACCGCCGAGCGGGTCCTCGAGATGATCCAGCTTCTCTTGGATCTTCTAGAGGCACCTGATCCTTGCACCCTTGAGACATTCCTTGGAAGAGTCCCTATGGTCTTCAATGTTGTAATCCTTTCTCCCCATGGTTACTTTGCCCAAGATAATGTCTTGGGATACCCTGATACTGGTGGGCAGGTTGTTTACATCCTGGATCAAGTTCGTGCCTTGGAGAATGAGATGCTCAACCGCATCAAGAAACAAGGCTTGGATATCACTCCTCGTATTCTCATTATCACTCGTCTTCTCCCTGATGCAGTAGGAACAACCTGTGGCGAACGTCTAGAGAGGGTATATGATACTGAATATTGTGACATTCTCCGAGTTCCTTTCAGAACAGAGAAGGGAATTGTTCGCAAATGGATCTCGAGATTCGAAGTCTGGCCATACCTAGAGACTTATGCTGAGGATGTTGCTGTTGAACTTGCTAAGGAGTTGCAAGCCAAGCCAGATCTGATTGTTGGAAACTACAGTGATGGAAACATTGTTGCCTCTTTGTTAGCACATAAATTAGGAGTAACTCAGTGTACCATTGCTCATGCTCTAGAAAAGACCAAATACCCCGAGTCTGACATTTACTGGAAAAAATTCGAAGAGAAATATCACTTTTCATGCCAATTTACTGCTGATCTTTTTGCAATGAACCACACAGACTTTATCATCACCAGCACCTTCCAAGAGATTGCTGGGAGCAAGGATACTGTTGGACAGTACGAGAGTCACACTGCCTTCACCCTTCCTGGTCTTTACCGAGTTGTTCACGGTATTGATGTCTTTGATCCAAAGTTCAACATTGTTTCTCCAGGAGCTGATATGGGCATATACTTCCCATACACTGAAACTGAGCGTAGGTTAACAAATTTCCACCCTGAGATTGAAGAGCTTCTTTACAGCTCAGTGGAGAACGAGGAACACATATGTGTATTGAAGGACCGCAACAAGCCAATCATCTTCACCATGGCAAGACTTGACCGTGTGAAGAACATCACAGGACTTGTTGAGTGGTACGGAAAGAACGCTCGGCTCCGGGAGTTGGTCAATCTAGTTGTTGTTGCTGGAGACAGGAGGAAGGAGTCGAAGGACTTGGAAGAGAAGGCTGAGATGAAGAAGATGTATGGCCTCATCGAGACCTACAAGTTGAATGGCCAATTCAGATGGATCTCCTCTCAGATGAACAGAGTTAGAAATGGAGAGCTCTATCGTGTAATTTGTGACACAAAGGGTGCTTTTGTGCAGCCTGCAGTTTATGAAGCCTTTGGGTTGACAGTGGTTGAAGCCATGACTTGTGGATTGCCAACATTTGCCACATTCAATGGTGGTCCTGCTGAGATCATCGTGCATGGAAAATCTGGATACCACATTGACCCCTACCATGGTGACCGTGCTGCTGAGATCCTTGTTGACTTCTTTGAGAAGAGCAAAGCAGACCCATCTCACTGGGACAAAATCTCCGAGGGAGGACTCAAGCGTATTCAAGAGAAGTACACATGGCAGATTTACTCTGACAGGCTCTTGACACTGACGGGTGTCTATGGCTTCTGGAAGCATGTCACCAACCTTGAACGCCGTGAGAGCAAACGTTACCTCGAGATGTTCTATGCTCTCAAGTACCGCAAATTGGCTGAGTCTGTTCCCCTTGCCATTGAAGAGTAA 2421 0.4655 MAHHPLTHSHSFRERIDETLSGNRNEILALLSRLEAKGKGILQHHQVIAEFEEIPEENRKKLQDGAFGEVLRSTQEAIVLPPFVALAVRPRPGVWEYLRVNLHMLVVDELRPAEYLRFKEELVEGTANGNFVLELDFEPFNASFPRPTLNKSIGNGVEFLNRHLSAKLFHDKESMQPLLEFLRLHSYKGTTMMLNDKVQNLNSLQHVLRKAEEYLTSVAPATPYSEFESRFQEIGLERGWGDTAERVLEMIQLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLNRIKKQGLDITPRILIITRLLPDAVGTTCGERLERVYDTEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYAEDVAVELAKELQAKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMGIYFPYTETERRLTNFHPEIEELLYSSVENEEHICVLKDRNKPIIFTMARLDRVKNITGLVEWYGKNARLRELVNLVVVAGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMTCGLPTFATFNGGPAEIIVHGKSGYHIDPYHGDRAAEILVDFFEKSKADPSHWDKISEGGLKRIQEKYTWQIYSDRLLTLTGVYGFWKHVTNLERRESKRYLEMFYALKYRKLAESVPLAIEE 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00387 806 FunFam Sucrose synthase 146 275 - -
Vian4g00387 806 FunFam Sucrose synthase 280 542 - -
Vian4g00387 806 PANTHER - 8 805 IPR012820 GO:0005985|GO:0016157
Vian4g00387 806 Gene3D Glycogen Phosphorylase B; 527 753 - -
Vian4g00387 806 Gene3D - 25 145 - -
Vian4g00387 806 Pfam Sucrose synthase 9 553 IPR000368 GO:0005985|GO:0016157
Vian4g00387 806 FunFam Sucrose synthase 11 145 - -
Vian4g00387 806 Pfam Glycosyl transferases group 1 564 738 IPR001296 GO:0016757
Vian4g00387 806 NCBIfam sucrose synthase 24 802 IPR012820 GO:0005985|GO:0016157
Vian4g00387 806 Gene3D Glycogen Phosphorylase B; 280 796 - -
Vian4g00387 806 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 295 763 - -
Vian4g00387 806 Gene3D - 146 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00387 Vian-Chr4 4392174 4396041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00387 2 806 Glycosyltransferase AT3G43190 83.975 0.0 1426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00387 K00695 - gmx:100806761 1560.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00387 4 4392174 4396041 Vian4g00387 4 4392174 4396041 ECH
Vian1g00465 1 4317491 4321419 Vian4g00387 4 4392174 4396041 PCT