Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00384 ATGAGGACGTCGTCGTTCGGGAGATGCAGCAGCGGCGAGTTCGAATTGCCCGAGAGCTTCGGCACCTCGTCTCCGACGGTCGGAGCACGCGCCTACGGCGCAATGATGCCGGTATTCCTCAACGACCTCCGGAGCAATCACCACAAGGAGCTCGTGGAGATCACGCTGGAACTCGAAAATGACGCGGTCCTTCTCTGCAACGTGACGCCGGCGGCCGCGTATTCCGCTCCCAATGCTTCTCCATCGTCGAGCAGGGGAGGAGTCGACGACGGCGGCGTGGCTCGGAGTCTCTCTATTACGTCGAGGATTCGGAGGAAGTTCCCGTGGCTTCGGTCGCTATCGTCAGCGTCGGTGGAGAGTGTCGCCGCCGCTGAAGATCCAGTGACGACGGCGCGAAACGCGCGGAAAATGAGAGCGAAGCTTGAACGAACGAGGTCCAGTGCTCAGAGAGCTCTGAAAGGTCTGAGATTCATCAGCAAGTCCGGGGAGGCCAGCGAGGAGCTGTGGGGAAAGGTGCAAGAACGGTTCGGCTTGTTGGCCAAAGATGGCATGCTCGCTCGTGAAGACTTCGGTGAATGCATAGGGATGGAAGATTCGAAGGAATTTGCAGTGTGTATATTCGACGCATTGACTCGAAGGAAGGAAAGGAGAGTTAGTAGCATAAACAGAGAAGAGTTGCACGAGTTCTGGTTGCAAATTTCTGACCAGAGTTTTGATGCTCGCCTGCAGATTTTCTTTGACATGGCAGACAGTAACGAGGACGGAAGAATTACTAGAGATGAAGTACAAGAGCTCATAATGCTCAGTGCTTCCGCAAACAAGTTATCAAAGCTAAAGGAACAAGCTGAAGGATACGCTTCCTTAATAATGGAAGAATTAGACCCAGAAAACCTGGGTTATATCGAGCTGTGGCAGTTAGAAATGTTGTTACTAGAAAAGGATAGATACATGAACTACAGCAGACAACTAAGCAGCGCAAGTGTAAATTGGAGTCAAAATATGAACGAGACAAGAACTAGAAATGATATAGAAAGATTTCGCAGAACTGTCCAATGTCTTGCTTTAGAGTATTGGAGGAGAGGTTGGATTTTGTTGTTGTGGTTGGTTACCATTGCTAGCCTCTTTGGCTGGAAATTTTACCAGTATAGAAACAGATCTACTTTCCAAGTCATGAGCTACTGCATACCCGTAGCCAAGGGTGCTGCAGAAACACTCAAGTTCAACATGGCTCTCGTCCTCTTACCAGTTTGTCGAAACACTCTCACATGGCTTCGTTCCACCGGAGCCAGAAAGTTTGTGCCCTTCGATGACAACATTAATTTCCACAAGATGATTGCATTCGCCATAGCTGTTGCAGTCGCCGTTCATGCCGGCAGTCATCTGGCGTGTGATTTTCCCCTTCTCGTAAACTCATCTCCGGAAAAATTTTCAGTTATAGCTTCAGATTTCAATAACAAAAGACCCACATACAAATCACTTCTGACCGGAGTAGAAGGCGTAACTGGAATCTCAATGGTTGTTCTCATGGCCATCTCTTTCACTCTAGCAACTCATCACTTCCGGAGAAACGCAGTGAGGCTTCCTTCACCCTTTAACAGATTGACAGGCTTCAACGCATTTTGGTACTCGCACCACCTTTTTGCTCTGGTCTACGTTCTGCTACTCGTCCATGGAACATTCTTGTATTTGACCCATCGGTGGTACCAGAAAACGACATGGATGTATATCTCTGTTCCTCTGCTGCTGTACATAGCAGAGCGTACTCTACGCACTCGAAGATCAGCACATTATACGGTGAAAATTCTGAAGGTTTCGGGGCTACCAGGAAATGTCTTCAGCTTAATCATGTCTAAGCCTAATGGATTCAAGTACAAAAGCGGACAGTACATATTCTTACAATGTCCGAGAGTCTCTCCCTTTGAGTGGCACCCTTTTTCCATCACCTCAGCTCCAGGAGATGAGTACCTAAGTGTTCACATCCGGACAGTGGGAGACTGGACCCAAGAACTAAAGCTTCTGCTAACAAAAGATGATGACAAACTGCCTTCGATTAAACGTGGTGCGACGTTTGGTGAACTAATGCAACTGGACCAAAGAGGACAACCGAGACTGCTCGTTGATGGCCCTTATGGAGCTCCAGCACAAGACTACCAGAGCTTTGATGTACTACTACTCATAGGATTAGGAATTGGAGCAACTCCTTTCATTAGCATTCTCCGAGATCTTCTCAATAACACCAAAACATTGGATGAACTCGGGGTGCAGGAACCATCAAACACAGAAACAAGTCAAGCGACCAGATCAGATGAGAGCTCCAATAGTTTTACATCATCAAACTTAACGCCCGGAGGAAATAAGAGATCACGAAGGACTACAAATGCTTATTTCTACTGGGTTACTAGGGAGCCTGGATCTTTTGAATGGTTTAAAGGAGTAATGGACGAAGTTGCAGAAATGGATCACAAAGGGCAAATTGAGCTCCACAACTATCTTACAAGTGTCTATGAAGAGGGGGATGCAAGATCAACCTTAATCACAATGATCCAAGCACTGAACCATGCCAAACATGGTGTTGACATCCTATCAGGCACTCGAGTAAGAACACACTTTGCTAGGCCTAATTGGAAAGAGGTTTTCAACAAGATTGCCTCCAAACATCCGTTTTCTACAGTAGGAGTGTTCTATTGCGGAATGCCAGTATTGGCAAAGGAGCTAAAGAAGCTATCACTTGAACTCAGCCACAAGACAACTACACGCTTTGAGTTTCACAAGGAGTACTTCTGA 2784 0.4709 MRTSSFGRCSSGEFELPESFGTSSPTVGARAYGAMMPVFLNDLRSNHHKELVEITLELENDAVLLCNVTPAAAYSAPNASPSSSRGGVDDGGVARSLSITSRIRRKFPWLRSLSSASVESVAAAEDPVTTARNARKMRAKLERTRSSAQRALKGLRFISKSGEASEELWGKVQERFGLLAKDGMLAREDFGECIGMEDSKEFAVCIFDALTRRKERRVSSINREELHEFWLQISDQSFDARLQIFFDMADSNEDGRITRDEVQELIMLSASANKLSKLKEQAEGYASLIMEELDPENLGYIELWQLEMLLLEKDRYMNYSRQLSSASVNWSQNMNETRTRNDIERFRRTVQCLALEYWRRGWILLLWLVTIASLFGWKFYQYRNRSTFQVMSYCIPVAKGAAETLKFNMALVLLPVCRNTLTWLRSTGARKFVPFDDNINFHKMIAFAIAVAVAVHAGSHLACDFPLLVNSSPEKFSVIASDFNNKRPTYKSLLTGVEGVTGISMVVLMAISFTLATHHFRRNAVRLPSPFNRLTGFNAFWYSHHLFALVYVLLLVHGTFLYLTHRWYQKTTWMYISVPLLLYIAERTLRTRRSAHYTVKILKVSGLPGNVFSLIMSKPNGFKYKSGQYIFLQCPRVSPFEWHPFSITSAPGDEYLSVHIRTVGDWTQELKLLLTKDDDKLPSIKRGATFGELMQLDQRGQPRLLVDGPYGAPAQDYQSFDVLLLIGLGIGATPFISILRDLLNNTKTLDELGVQEPSNTETSQATRSDESSNSFTSSNLTPGGNKRSRRTTNAYFYWVTREPGSFEWFKGVMDEVAEMDHKGQIELHNYLTSVYEEGDARSTLITMIQALNHAKHGVDILSGTRVRTHFARPNWKEVFNKIASKHPFSTVGVFYCGMPVLAKELKKLSLELSHKTTTRFEFHKEYF 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00384 927 Gene3D Translation factors 583 681 - -
Vian4g00384 927 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 719 927 IPR039261 -
Vian4g00384 927 CDD NOX_Duox_like_FAD_NADP 601 879 - -
Vian4g00384 927 ProSitePatterns EF-hand calcium-binding domain. 250 262 IPR018247 -
Vian4g00384 927 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 594 716 IPR017927 GO:0016491
Vian4g00384 927 PANTHER NADPH OXIDASE 202 927 - -
Vian4g00384 927 FunFam Respiratory burst oxidase protein E 711 927 - -
Vian4g00384 927 SUPERFAMILY Riboflavin synthase domain-like 597 713 IPR017938 -
Vian4g00384 927 FunFam Respiratory burst oxidase homolog A 141 258 - -
Vian4g00384 927 Pfam Ferric reductase NAD binding domain 720 909 IPR013121 GO:0016491
Vian4g00384 927 ProSiteProfiles EF-hand calcium-binding domain profile. 237 272 IPR002048 GO:0005509
Vian4g00384 927 Pfam Ferric reductase like transmembrane component 400 555 IPR013130 -
Vian4g00384 927 SUPERFAMILY EF-hand 157 321 IPR011992 -
Vian4g00384 927 Coils Coil 131 151 - -
Vian4g00384 927 SFLD NADPH oxidase subgroup (NOX) 133 927 - -
Vian4g00384 927 FunFam Respiratory burst oxidase homolog A 585 677 - -
Vian4g00384 927 PRINTS Cytochrome B-245 heavy chain signature 537 557 IPR000778 GO:0016020|GO:0016491
Vian4g00384 927 PRINTS Cytochrome B-245 heavy chain signature 702 715 IPR000778 GO:0016020|GO:0016491
Vian4g00384 927 PRINTS Cytochrome B-245 heavy chain signature 725 742 IPR000778 GO:0016020|GO:0016491
Vian4g00384 927 PRINTS Cytochrome B-245 heavy chain signature 445 463 IPR000778 GO:0016020|GO:0016491
Vian4g00384 927 Pfam Respiratory burst NADPH oxidase 140 240 IPR013623 GO:0004601|GO:0050664
Vian4g00384 927 Gene3D - 711 927 IPR039261 -
Vian4g00384 927 CDD EFh 220 267 IPR002048 GO:0005509
Vian4g00384 927 Gene3D - 141 258 - -
Vian4g00384 927 Pfam FAD-binding domain 598 713 IPR013112 GO:0016491
Vian4g00384 927 MobiDBLite consensus disorder prediction 753 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00384 Vian-Chr4 4352086 4359801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00384 23 927 Miscellaneous Gene Families AT1G19230 62.065 0.0 1165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00384 K13447 - gmx:100805697 1639.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00384 4 4352086 4359801 Vian4g00384 4 4352086 4359801 ECH