Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00353 ATGGCGCGGTTTTCAGTGGTGTGGTGCGCGGTGGCGGTGCTATTGTGCGCCGTGGCGAGCGGGTCATGGTTGGAGGATGCGAATCCGATTCGGATGGTGTCGGACGTGGAGGGGCAGGTGATTCAGGTGATAGGTCAGTGCCGGAGCGCGGTGTCGTTTGCTCGGTTCGTTGGGAGGTTCGGGAAGAGTTACCAGAACGAGGAAGAGATGAAGCGGAGGTACGATATATTCTCGCGAAACCTCAGGTTCATCCGCGCCCACAACAAGAAACGTTTGCCCTACACTCTCTCCGTTAATCATTTTGCTGATTGGACTTGGGAGGAATTCCAAACACACAGACTAGGTGCTGCTCAAAATTGCTCTGCCACTCTTAAAGGCAACCACAAGCTTACCGATGCTGTTCTTCCTCCAGTGAAAGACTGGAGGCAAGAAAATATAGTGAGCGCAGTTAAAGACCAAGGCAGCTGCGGATCATGCTGGACATTCAGCACAACCGGGGCTTTAGAAGCAGCCTATGCACAAGCGCATGGAAAGAGTATCTCTCTTTCTGAGCAGCAACTAGTGGATTGTGCTGGTCATTTCAACAACTTTGGCTGTAATGGTGGGTTGCCATCACAAGCCTTTGAGTACATTAAATACAATGGTGGGCTTGACACAGAGGAAGCATATCCTTACACGGGAAAAGACGGTGTCTGCAAATTTTCAGCTGAAAATGTTGGGATTCGAGTCCTTGATTCTGTCAACATCACCTTGGGTGCTGAGGATGAATTAAAACATGCAGTTGCATTTGTTCGACCAGTTAGTGTGGCCTTTGAGGTTGTTAATGGGTTCCGATTCTATGAGAAAGGAGTTTACACCAGTGACACTTGCGGTACCACTCCCCTGGATGTGAACCATGCTGTTCTTGCTGTTGGGTATGGAGTTGAAAATGGTGTCCCATATTGGCTCATTAAAAACTCATGGGGAGAATCTTGGGGTGACAATGGCTACTTCAAGATGGAATTGGGGAAGAACATGTGCGGTGTTGCAACTTGTGCTTCTTATCCAATTGTGGCCTAA 1059 0.4891 MARFSVVWCAVAVLLCAVASGSWLEDANPIRMVSDVEGQVIQVIGQCRSAVSFARFVGRFGKSYQNEEEMKRRYDIFSRNLRFIRAHNKKRLPYTLSVNHFADWTWEEFQTHRLGAAQNCSATLKGNHKLTDAVLPPVKDWRQENIVSAVKDQGSCGSCWTFSTTGALEAAYAQAHGKSISLSEQQLVDCAGHFNNFGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSAENVGIRVLDSVNITLGAEDELKHAVAFVRPVSVAFEVVNGFRFYEKGVYTSDTCGTTPLDVNHAVLAVGYGVENGVPYWLIKNSWGESWGDNGYFKMELGKNMCGVATCASYPIVA 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00353 352 SMART Inhibitor_I29_2 53 109 IPR013201 -
Vian4g00353 352 CDD Peptidase_C1A 136 349 IPR039417 -
Vian4g00353 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Vian4g00353 352 SMART pept_c1 135 350 IPR000668 GO:0006508|GO:0008234
Vian4g00353 352 PRINTS Papain cysteine protease (C1) family signature 314 320 IPR000668 GO:0006508|GO:0008234
Vian4g00353 352 PRINTS Papain cysteine protease (C1) family signature 153 168 IPR000668 GO:0006508|GO:0008234
Vian4g00353 352 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Vian4g00353 352 Pfam Papain family cysteine protease 136 350 IPR000668 GO:0006508|GO:0008234
Vian4g00353 352 SUPERFAMILY Cysteine proteinases 49 350 IPR038765 -
Vian4g00353 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 314 333 IPR025661 -
Vian4g00353 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 153 164 IPR000169 -
Vian4g00353 352 Pfam Cathepsin propeptide inhibitor domain (I29) 53 109 IPR013201 -
Vian4g00353 352 Gene3D Cysteine proteinases 44 351 - -
Vian4g00353 352 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 53 344 IPR013128 GO:0008234
Vian4g00353 352 FunFam Cysteine proteinase 2, putative 46 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00353 Vian-Chr4 3938422 3942549 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00353 K01366 - gmx:547734 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00353 4 3938422 3942549 Vian4g00353 4 3938422 3942549 ECH