Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00343 ATGGCGTCGGTGTACATACCGGTGCAGAATTCGGAGGAGGAGGTTAGGGTTGCTCTCGATCAGCTTCCGCGTGATGCTTCCGACATCCTCGACATCCTTAAGGCTGAACAAGCCCCTCTTGATCTCTGGCTCATCATTGCGAGGGAGTACTTCAAGCAGGGAAAAATTGATCAATTTCGCCAGATTTTGGAGGAAGGATCTAGTCCAGAAATTGATGACTATTATGCTGATGTTAGATACGAGAGGATAGCTATCTTAAATGCCCTAGGAGCTTACTATAGCTACCTTGGAAAAATAGAGACAAAACAACGAGAAAAAGAGGAACATTTTATTTTGGCAACACAATACTACAACAAAGCATCTAGGATTGACATGCATGAGCCCTCCACATGGGTTGGGAAAGGTCAGCTTTTGCTAGCAAAGGGGGAAGTAGAACAGGCATCTGCCGCATTTAAGATTGTGTTAGATGGAGTCCGTGATAATGTTCCTGCTCTTTTGGGCCAGGCTTGTGTTGAGTTCAATCGTGGACGATACTCGGATTCACTTGATCTGTATAAGAGAGCATTGCAAGTGTTTCCCAATTGCCCAGCAGCTGTGAGACTTGGCATAGGTCTATGCCGCTACAAATTAGGTCAATTTGAGAAGGCTCAGCAAGCATTTGAGCGACTAGATCCAGAAAATGTTGAAGCTCTAGTTGCCCTTGCAATAATGGACTTGCGTACTAATGAAGCTACTGGTATCAGGAAGGGAATGGTAAAAATGCAGAGGGCATTTGAGATATACCCATACTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTCTTCTTCACTGGTCAACATTTTTTAGTTGAGCAGCTGACTGAAACTGCATTGGCTGTTACCAATCATGGCCCAACAAAGTCTCACTCATACTACAATTTAGCACGCTCATACCATAGCAAGGGAGACTATGACAAAGCTGGGGTGTATTACATGGCATCTGTCAAGGAAGTCAACAAGCCCCACGAATTTGTCTTTCCTTATTATGGTCTGGGACAAGTGCAGATAAAGTTGGGAGATTTTAAAAGTGCACTCTCAAACTTTGAAAAGGTCCTGGAGGTATACCCGGATAATTGTGAGACGTTGAAAGCGCTTGGGCATATATATGTTCAGCTTGGTCAAACTGACAAAGGCCAGGACTTTATTAGGAGAGCTACAAAAATTGATCCCCGTGATGCCCAGGCATTTCTTGAGCTGGGAGAATTGTTAATTCTTTCCGACACAGGAGCTGCACTTGATGCATTCAAAACTGCTCGAACTCTTTTTAAGAAGGGAGGTCAAGAAGTACCAATTGAATTACTAAATAATGTTGGTGTGCTTCAGTTTGAAAGGGGTGAATTTGAGCTTGCCCAACAAACATTTAAGGAGTCTCTAGGTGATGGTGTTTGGTTATCTTTCATCAATGAGGAAAATAAGTCTTCTGTTGATGCTGCTACTTCTACTCTTCAATTCAAGGACATGCAATTATTTCATGACCTTGAAAGCGATGGTCATCATGTAGAAGTACCTTGGGATAAAGTCACTGTACTTTTTAACCTGGCTAGGTTACTTGAACAGTTAAATGATTCTGGAACTGCCAGCATTTTGTATCGCCTTATCTTGTTCAAGTACCCAGACTATATTGATGCGTATTTGAGGCTAGCTGCAATTGCAAAAGCTCGGAACAACATTCTATTAAGCATTGAACTGGTTAATGATGCCTTGAAGGTGAATGACAAGTGTCCCAATGCATTATCAATGCTTGGTGAGTTGGAGTTGAAAAATGATGATTGGGTAAAGGCAAAAGAAACACTCCGAGCTGCTAGTGATGCAACGGATGGCAAGGACCCATATGCTACTCTCTCTCTGGGAAACTGGAACTACTTTGCAGCAGTTCGCAATGAAAAGAGAAATCCCAAGCTAGAGGCTACTCATTTGGAAAAGTCCAAAGAACTTTATACTAGAGTTCTGATTCAGCATTCTTCTAATTTATATGCTGCCAATGGTGCTGCGGTAGTGTTAGCGGAAAAAGGTCATTTTGATGTCTCAAAGGATATCTTTACACAGGTTCAAGAAGCTGCCAGTGGTAGTGTTTTTGTCCAGATGCCTGATGTTTGGATAAATCTGGCCCATGTTTATTTTGCCCAGGGGAATTTTGCTTTGGCTGTGAAAATGTACCAAAACTGCTTGCGGAAGTTTTATCATAACACAGACTCTCAAATACTTCTGTATTTAGCTCGTACCCATTATGAGGCTGAACAGTGGCAAGACTGCATAAAAACTCTACTGAGAGCCATCCATTTGGCACCCTCAAACTATACTTTAAGGTTTGATGCTGGGGTTGCAATGCAAAAATTTTCAGCATCAACATTACAGAAAGCAAAGAGGACTGCAGATGAGGTGAGAGCAACTGTTGCTGAGCTACAAAATGCTGTTCGTGTATTTAGTCAGTTGTCTGCTGCTTCCAACCTACACATTCATGGGTTTGATGAGAAGAAAATTGACACTCACGTTGGATACTGCAACCACTTACTTTCGGCTGCTAAAGTTCATCTTGAAGCTGCTGAGCGTGAAGAGCAGCAAGTACGGCAGAGACAAGAACTTGCTCGTCAGGTTGCATTGGCAGAGGAAGCTCGACGAAAGGCTGAAGAGCAAAGGAAGTTTCAGATGGAAAGGAGAAAACAAGAAGATGAACTAAAGCGAGTGCAACAACAGGAGGAACATTTTAAGCGTGTTAAGGTAAGGATTTCTAGGTATTCTTTTAAGAGTAGAAGGGCTAGAATATATGATGAAGAGGGAGGAACCGGTGAGAAGAAGAAAAGAAAAAGTGGAAAGAAGAGAAAGAAGGATAAGCATTCAAAATCACGCTATGACACGGAGGAACCGGAAACCGATATGATGGATGAACAAGAAATGGAAGAGGAAGAAGCTGACGCTGCACCATCCTCAAGCATAGCTCGGCGAAGGCAAGCATTATCGGAATCTGATGATGATGAACCATTGCAAAGGCAGGCTGTCGAGGGAAAGTTGGTACAGAGAGGTGAAGGGAGTAACTCCCTGATAATAATAATAATACGAGAATCTGAAATTCCCCAATTGACCGTTACATTACGGACAAGGAATGTATTAACATCTAACTCTTACTTTGAAGATACTTGTATCACAATATTCTACCTTCGGACGAGTTGTTGGTATTTTTAA 3222 0.4221 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGVRDNVPALLGQACVEFNRGRYSDSLDLYKRALQVFPNCPAAVRLGIGLCRYKLGQFEKAQQAFERLDPENVEALVALAIMDLRTNEATGIRKGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRRATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQEVPIELLNNVGVLQFERGEFELAQQTFKESLGDGVWLSFINEENKSSVDAATSTLQFKDMQLFHDLESDGHHVEVPWDKVTVLFNLARLLEQLNDSGTASILYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNDKCPNALSMLGELELKNDDWVKAKETLRAASDATDGKDPYATLSLGNWNYFAAVRNEKRNPKLEATHLEKSKELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFKRVKVRISRYSFKSRRARIYDEEGGTGEKKKRKSGKKRKKDKHSKSRYDTEEPETDMMDEQEMEEEEADAAPSSSIARRRQALSESDDDEPLQRQAVEGKLVQRGEGSNSLIIIIIRESEIPQLTVTLRTRNVLTSNSYFEDTCITIFYLRTSCWYF 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00343 1073 Gene3D Tetratricopeptide repeat domain 645 834 IPR011990 GO:0005515
Vian4g00343 1073 Gene3D Tetratricopeptide repeat domain 341 501 IPR011990 GO:0005515
Vian4g00343 1073 ProSiteProfiles TPR repeat profile. 339 372 IPR019734 GO:0005515
Vian4g00343 1073 SUPERFAMILY TPR-like 520 790 IPR011990 GO:0005515
Vian4g00343 1073 SUPERFAMILY TPR-like 107 280 IPR011990 GO:0005515
Vian4g00343 1073 MobiDBLite consensus disorder prediction 969 985 - -
Vian4g00343 1073 ProSiteProfiles TPR repeat profile. 373 406 IPR019734 GO:0005515
Vian4g00343 1073 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1011 IPR031101 GO:0006355|GO:0016570
Vian4g00343 1073 MobiDBLite consensus disorder prediction 939 1009 - -
Vian4g00343 1073 SMART tpr_5 197 227 IPR019734 GO:0005515
Vian4g00343 1073 SMART tpr_5 339 372 IPR019734 GO:0005515
Vian4g00343 1073 SMART tpr_5 555 588 IPR019734 GO:0005515
Vian4g00343 1073 SMART tpr_5 521 554 IPR019734 GO:0005515
Vian4g00343 1073 SMART tpr_5 162 195 IPR019734 GO:0005515
Vian4g00343 1073 SMART tpr_5 302 335 IPR019734 GO:0005515
Vian4g00343 1073 SMART tpr_5 373 406 IPR019734 GO:0005515
Vian4g00343 1073 SMART tpr_5 589 622 IPR019734 GO:0005515
Vian4g00343 1073 SMART tpr_5 746 779 IPR019734 GO:0005515
Vian4g00343 1073 SMART tpr_5 710 743 IPR019734 GO:0005515
Vian4g00343 1073 SMART tpr_5 128 161 IPR019734 GO:0005515
Vian4g00343 1073 FunFam protein CTR9 homolog 504 647 - -
Vian4g00343 1073 SUPERFAMILY TPR-like 262 472 IPR011990 GO:0005515
Vian4g00343 1073 Pfam Tetratricopeptide repeat 303 330 IPR019734 GO:0005515
Vian4g00343 1073 FunFam Rna polymerase-associated protein ctr9 648 832 - -
Vian4g00343 1073 Coils Coil 798 818 - -
Vian4g00343 1073 Gene3D Tetratricopeptide repeat domain 8 334 IPR011990 GO:0005515
Vian4g00343 1073 SUPERFAMILY TPR-like 647 738 IPR011990 GO:0005515
Vian4g00343 1073 ProSiteProfiles TPR repeat region circular profile. 339 372 - -
Vian4g00343 1073 ProSiteProfiles TPR repeat profile. 710 743 IPR019734 GO:0005515
Vian4g00343 1073 Coils Coil 852 919 - -
Vian4g00343 1073 CDD UDM1_RNF168 856 908 - -
Vian4g00343 1073 Gene3D Tetratricopeptide repeat domain 502 627 IPR011990 GO:0005515
Vian4g00343 1073 MobiDBLite consensus disorder prediction 892 913 - -
Vian4g00343 1073 Pfam Tetratricopeptide repeat 715 778 - -
Vian4g00343 1073 Pfam Tetratricopeptide repeat 175 233 - -
Vian4g00343 1073 Pfam Tetratricopeptide repeat 351 409 - -
Vian4g00343 1073 FunFam protein CTR9 homolog 9 333 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00343 K15176 - gmx:100794371 1786.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00343 4 3821440 3838002 Vian4g00343 4 3821440 3838002 ECH