Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00326 ATGGGGGAAGAGGTGCGTGTAACCAATTTGCATAATAGAGACGGTGGAAACGAAGATCAGAACCAGGAATTCGACATTTATCCTTTGAGTAGTTACTATTTTGGATCCAAAGATACCATTCCCTTCAAAGACCACACTCTACATCATCACCTTCTCAGGATCCAATCCAACTATGCTGCCAGTGGGTTACGAACTTCTGTGGAGGCTGTCTTACTGGTTGAATTGTTCAAACATCCACACTTGTTGCTTTTGCAAGTAAGAAATTCCATCTATAAACTTCCCGGTGGTAGATTAAGGCCAGGCGAATCAGATACTGATGGATTGAAGCGTAAGCTGACAAGGAAGCTTTCTGTTGATGAAGATGGAGATGGTTCAGAATGGGAGGTTGGTGAATGCCTTGGAATGTGGTGGAGACCTGATTTTAAAACATTATTGTATCCTTTCTTGCCACCAAATGTAAAACAGCCAAAGGAGTGTACAAAAGTGTTCCTTGTGAAGTTGCCTGCCAGTACGAAGTTCATTGTACCCAAGAACATGAGGTTGCTTGCAGTTCCATTGTGCCAAGTTCATGAAAATCAAAAGACATATGGGCAAATAATATCAGGGGTTCCACAGCTTCTGTCGAAATTCTCTTTCAACATGTTGGAATCTTGA 654 0.419 MGEEVRVTNLHNRDGGNEDQNQEFDIYPLSSYYFGSKDTIPFKDHTLHHHLLRIQSNYAASGLRTSVEAVLLVELFKHPHLLLLQVRNSIYKLPGGRLRPGESDTDGLKRKLTRKLSVDEDGDGSEWEVGECLGMWWRPDFKTLLYPFLPPNVKQPKECTKVFLVKLPASTKFIVPKNMRLLAVPLCQVHENQKTYGQIISGVPQLLSKFSFNMLES 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00326 217 FunFam Pre-mRNA cleavage factor Im subunit 2 22 214 - -
Vian4g00326 217 PANTHER PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT 19 216 IPR016706 GO:0003729|GO:0005849|GO:0006378
Vian4g00326 217 MobiDBLite consensus disorder prediction 1 20 - -
Vian4g00326 217 MobiDBLite consensus disorder prediction 1 22 - -
Vian4g00326 217 Pfam Nucleotide hydrolase 23 210 IPR016706 GO:0003729|GO:0005849|GO:0006378
Vian4g00326 217 ProSiteProfiles Nudix hydrolase domain profile. 62 188 IPR000086 -
Vian4g00326 217 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 22 214 - -
Vian4g00326 217 PIRSF CPSF-25 2 217 IPR016706 GO:0003729|GO:0005849|GO:0006378
Vian4g00326 217 SUPERFAMILY Nudix 70 140 IPR015797 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00326 Vian-Chr4 3616986 3618608 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00326 K14397 - gmx:100791216 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00326 4 3616986 3618608 Vian4g00326 4 3616986 3618608 ECH