Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00320 ATGGAGTGCGTTGCAGCGAGAAACTTGGCGGCAATGGCGTTTTGCGTGAGTCCTTCGTCGAGGTTGAGGTTGCGGAAGAAGATGTGGAGAAGAAGAACCGCGTCTGGCGGCCACGGCGTTCGGTGGCGCTCGCGGTTGCTGAAGGTGGAGGCGAAGGCAGGGAGCGAGAGTTGCGTGGCGACCAAAGAAGACTTCGCCGATGAGGACGATTACGTGAAGGCCGGAGGCTCCGAACTTGTTTTCGTACAAATGCAACAGAACAAAGCCATGGAAATGCAATCCAAGATCGTGGATAAGTTGCGCCCCATAGGAGATGATATACTAGATCTAGTTGTGATTGGTTGTGGTCCGGCTGGTCTTGCTCTGGCTGCTGAATCAGCCAAGTTGGGACTAAAAGTTGGGCTTATTGGCCCGGATCTTCCTTTTACAAATAATTATGGTGTGTGGGAGGACGAATTTAGAGGTCTCGGACTTGAAGGTTGCATTGAACATGTTTGGAAGGATACCGTTGTCTATCTCGACAATGAGGATCCCGTTTTCATTGGACGTTCCTATGGACGTGTCAGTCGGCATCTGCTTCATGAGGAATTGTTAAGCAGGTGTGTCGAGTCAGGTGTCACATATCTTAGCTCAAGAGTAGAAAATATTATTGAGGCGAGCAATGGTCACAGTCATGTCGTCTGTGAATATGATATTGTAGTGCCCAGCAGGCTTGTTACTGTTGCATCAGGAGCTGCTTCGGGGAAACTGTTGCAATATGAGGTCGGGGGTCCAAAGGTTTCTGTTCAAACAGCTTATGGTGTGGAAGTTGAGGTGGAAAACAATCCTTATGATCCAAATGTGATGGTTTTCATGGATTACAGAGACTACATGAAGCAAAATGTTCAAGGTCTAGAAGCAAATTATCCAACATTTCTATATGCAATGCCCATGTCCAGTACAAGAGTGTTTTTTGAGGAAACCTGTTTAGCGTCAAAAGATGCGATGCCTTTTGATTTACTAAAGAAGAAGCTCTTTTCGAGATTAAATTCAATGGGGATCAGAATCACTAAAACTTACGAAGAGGAATGGTCTTATATCCCTGTTGGCGGATCCTTACCAAACACAGAACAAAAGAACCTTGCATTTGGTGCAGCTGCCAGCATGGTGCATCCAGCCACAGGCACGACTTCATCACGGTACTCCGTTGTGAGATCTTTGTCAGAAGCTCCAAAATATGCTTCAGTAATTTCTAATATTTTGAAAGATGGCCATGCCAAGGACAATATTACCCAAGAAAGAAGAAAGGAGAATTTGTCTATGCAAGCTTGGAATACACTTTGGCCACAAGAAAGGAAACGGCAGAGGGCATTCTTTCTTTTTGGATTAGCTCTAATTGTGCAGCTGGACATTGGGGGAATTCGAACATTCTTTCGTACTTTCTTCTGCCTACCTGATTGGATGTGGCAGGGATTTCTTGGCTCCTCTCTCTCCTCTACAGATCTTTTATTATTTGCTTTCTACATGTTCATAATAGCACCAAATAACTTGAGAATGAGTCTAGTGAGACATCTGCTTTCAGATCCTACCGGTGCAACCATGATAAAGACTTACTTAGCGGTATAG 1605 0.4511 MECVAARNLAAMAFCVSPSSRLRLRKKMWRRRTASGGHGVRWRSRLLKVEAKAGSESCVATKEDFADEDDYVKAGGSELVFVQMQQNKAMEMQSKIVDKLRPIGDDILDLVVIGCGPAGLALAAESAKLGLKVGLIGPDLPFTNNYGVWEDEFRGLGLEGCIEHVWKDTVVYLDNEDPVFIGRSYGRVSRHLLHEELLSRCVESGVTYLSSRVENIIEASNGHSHVVCEYDIVVPSRLVTVASGAASGKLLQYEVGGPKVSVQTAYGVEVEVENNPYDPNVMVFMDYRDYMKQNVQGLEANYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKKLFSRLNSMGIRITKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGTTSSRYSVVRSLSEAPKYASVISNILKDGHAKDNITQERRKENLSMQAWNTLWPQERKRQRAFFLFGLALIVQLDIGGIRTFFRTFFCLPDWMWQGFLGSSLSSTDLLLFAFYMFIIAPNNLRMSLVRHLLSDPTGATMIKTYLAV 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00320 534 Pfam Lycopene cyclase protein 109 511 - -
Vian4g00320 534 PANTHER - 26 532 - -
Vian4g00320 534 FunFam lycopene epsilon cyclase, chloroplastic 105 453 - -
Vian4g00320 534 SUPERFAMILY FAD/NAD(P)-binding domain 107 507 IPR036188 -
Vian4g00320 534 Gene3D - 108 390 IPR036188 -
Vian4g00320 534 PRINTS Pyridine nucleotide disulphide reductase class-I signature 239 248 - -
Vian4g00320 534 PRINTS Pyridine nucleotide disulphide reductase class-I signature 109 131 - -
Vian4g00320 534 NCBIfam lycopene cyclase family protein 109 514 IPR010108 GO:0016117|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00320 Vian-Chr4 3550204 3559855 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00320 K06444 - gmx:100788180 959.133