Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00299 ATGGAGACTCCTCCTCAGCAAGGTGTGGTGAAGAAGAAGGAGACAAGAGGTCGAAAACCTAAGCCAAAGGACGACAAGAGAGATGAACATTCCAAGACAAAGGAAGGGAGAAAAACGCAGCAATATCAGCAGCAACAACAGCAGCAGCAGCAACAACCTTCCGTCGATGAGAAATACACGCAATGGAAGTCTCTCGTCCCTGTCCTCTATGACTGGCTTGCTAACCACAACCTCGTTTGGCCCTCTCTCTCTTGCCGGTGGGGTCCTCAGCTTGAACAAGCCACTTACAAGAATCTGAAATGGACTGATGGTAGCGTGCCAAATACTCTGGTGATTGCGAATTGCGAGGTTGTGAAGCCTAGGGTTGCGGCTGCAGAGCACATTTCACAGTTTAATGAAGAGGCACGGTCCCCGTTTGTGAAGAAGTTCAAGACCATCATACATCCTGGCGAGGTGAACAGAATTAGGGAATTACCACAAAATTCCAAGATAGTGGCAACACATACAGATAGCCCTGATGTCCTTGTCTGGGATGTTGAGAATCAACCTAACCGTCATGCTGTCCTTGGAGCTACAAACTCTCGGCCTGATTTGATATTGACTGGACACCAAGACAATGCAGAATTTGCTCTTGCTATGTGTCCAACTGAGCCCTATGTTCTTTCAGGAGGAAAGGACAAAACGGTGGTATTGTGGAGTATTGAGGACCATATAACATCTGCTGCCACAGGTGGATCAATTATCAAGCCAAACTCTAAATCTGGAGAAGCCAATGATAAAGCTGCTGAAAGCCCTTCTGTCGGGCCACGAGGTATCTACTGTGGGCATGAGGATACTGTTGAAGATGTGACTTTCTGTCCATCCAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATCTTATGGGATGCACGTGTTGGGTCTAGCCCTGTGGTTAAGGTTGAAAAAGCTCATAATGCTGATCTTCACTGTGTTGATTGGAATCCACATGATGATAATCTGATTCTTACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGATCGTCGCAATCTCACCACTAACGGAGTTGGGTCGCCCATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCTGAGGATGGTCTCTTGAACATTTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGATCTGGAAAATCAATAAGTGCTCCTCCAGGGTTGTTTTTCCAACATGCTGGTCATAGAGATAAAGTAGTCGATTTTCATTGGAATGCATTTGATCCATGGACAATTGTTAGCGTCTCTGATGACTGTGAAAGTACTGGTGGAGGGGGCACATTGCAGAGCAGATTCAGGACTGGCATGGCTCAAGTTTTCTTTGCCATTTTTGACTTTTGTTTATTTTTTAATGTGAATGATTCTCACGTTCCAATTCAAAGGCCAGAGCAGATATGGCGCATGAGTGATTTGATCTACAGACCAGAAGAAGAGGTTTTAGCGGAGCTGGAGAAATTCAAATCTCATGTGGTGGCATGCGCTTCCAAGTCTGAAAAATGA 1599 0.4522 METPPQQGVVKKKETRGRKPKPKDDKRDEHSKTKEGRKTQQYQQQQQQQQQQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNLKWTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVENQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATGGSIIKPNSKSGEANDKAAESPSVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISAPPGLFFQHAGHRDKVVDFHWNAFDPWTIVSVSDDCESTGGGGTLQSRFRTGMAQVFFAIFDFCLFFNVNDSHVPIQRPEQIWRMSDLIYRPEEEVLAELEKFKSHVVACASKSEK 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00299 532 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 367 402 - -
Vian4g00299 532 MobiDBLite consensus disorder prediction 244 259 - -
Vian4g00299 532 MobiDBLite consensus disorder prediction 7 37 - -
Vian4g00299 532 ProSiteProfiles Trp-Asp (WD) repeats profile. 367 402 IPR001680 GO:0005515
Vian4g00299 532 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 351 - -
Vian4g00299 532 SMART WD40_4 193 233 IPR001680 GO:0005515
Vian4g00299 532 SMART WD40_4 360 400 IPR001680 GO:0005515
Vian4g00299 532 SMART WD40_4 139 178 IPR001680 GO:0005515
Vian4g00299 532 SMART WD40_4 266 306 IPR001680 GO:0005515
Vian4g00299 532 SMART WD40_4 418 454 IPR001680 GO:0005515
Vian4g00299 532 SMART WD40_4 311 351 IPR001680 GO:0005515
Vian4g00299 532 SUPERFAMILY WD40 repeat-like 140 452 IPR036322 GO:0005515
Vian4g00299 532 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 315 IPR001680 GO:0005515
Vian4g00299 532 MobiDBLite consensus disorder prediction 244 267 - -
Vian4g00299 532 MobiDBLite consensus disorder prediction 1 56 - -
Vian4g00299 532 MobiDBLite consensus disorder prediction 38 56 - -
Vian4g00299 532 PANTHER WD40 REPEAT FAMILY 47 515 - -
Vian4g00299 532 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 351 IPR001680 GO:0005515
Vian4g00299 532 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 57 95 IPR022052 -
Vian4g00299 532 Pfam WD domain, G-beta repeat 319 351 IPR001680 GO:0005515
Vian4g00299 532 Pfam WD domain, G-beta repeat 198 233 IPR001680 GO:0005515
Vian4g00299 532 Pfam WD domain, G-beta repeat 361 400 IPR001680 GO:0005515
Vian4g00299 532 Pfam WD domain, G-beta repeat 271 306 IPR001680 GO:0005515
Vian4g00299 532 Gene3D - 32 518 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00299 Vian-Chr4 3277550 3283485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00299 220 484 Miscellaneous Gene Families AT5G08390 24.265 2.96e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00299 K10752 - gmx:100779302 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00299 4 3277550 3283485 Vian4g00299 4 3277550 3283485 ECH