Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00288 ATGGCTCAGGCTGTAGTGAGCTTCATAGTGCAAAGTCTTGGTGATTTGCTGATTCAAGAAGCAGTGTTCCTATATGGGGTGGAAGACCAAGTGTTGCAGCTGCAAACTGAATTGAGGATGATGCGCTCTTACTTGCAAGATGCAGACAGAAGGCAAGATGAAAACGAAAGCCTAAGGAGTTGGATTTCAGAAATCAGAGAAGCAGCTTATGATTCTGATGATGTCATTGAGTCATATGCCCTCAGAGAGGCCTCAAGAAGAAATTTGCCAGGTGTGTCGAACCTCATCAGAAGGTATGCTTCAATCATCAACCGGTTTATAGAAATCCACATGGTGGGATCTCATGTTGGTAATGTCAAAGCCAGGATTTCTAGCCTCACAAGGAGTCTTAAAACCTATGGCATAAAACCTGAGAAAGAAGAGCCCTCAAATTCTATGCACGGGAGACAGAATTTGAGGAGGTCTTATTCACATGTCATTGAAGAGGACATAATTGGTGTTGACGATGATGTCAAGAAGTTGGAGTCATATTTGGTGGATCCCAGCAAAAGAGTGGTGGCCATTTGTGGGATGGGAGGATTGGGGAAGACAACATTGGCAAAGAAGGTGTATCATAGTGTTGATGTGAGGAACAGTTTTAAGAGCCGGGCTTGGGCTTACATATCACAGCACTGCCAAGCAAGGGATGTGTGGATAGGAATTTTATTTAGGCTGATCTCTCCTTCACAGGAGCAAAGACAGGAAATTGACAATATGAGAGATGAAGAGCTTGCAAAGATGCTTTACCAAGTTCAAATGGAGAAGAGTTGCTTAGTGGTCCTTGATGATATTTGGAATGCAGAAACATGGAGCAAACTGAAGCCTGCCTTCCCTCATGGAACATCAGTATCAGCAGTTGGTAGCAAAATATTGCTAACTTCTCGAAACATTGATGTTGCCTTCCAGATGGATCCTAGTTGTTATCTTCACACACTAAAATGTTTGAATGAAGTTGACAGCTGGGAGTTGTTCCAAAAGAAGTCATTTCTAAAAATTGATGATCCAGACTACGGAGAGAAGGAGAAGTTGGGAAGGGAAATGGTTGGAAGATGTGGAGGTTTACCATTGGCCATCATTGTTCTTGGAGGACTGTTAGCATCAAAGCCTACATTCTTTGAATGGGACACTGTGTGCCAGAACATCAACTCATATTTGAGGAGAGCAAACGGCAAAGAACAACGCTTAGAAGAGGTGTTGGCTTTGAGCTATTACGAATTACCATACCAGTTGAAGCCATGCTTCCTACACTTGGCTCATTTCCCTGAAAATTTAGAGATACCAACAAAGAAACTAATTAGAATATGGGTGGCAGAGGGTATTATATCTTTGGCTCACAGTGAAGGAGAAGGTGAAGAAGCTCTTGAGGATGTGGCACAACGTTACCTGACTGAGCTAGTGGAGAGGTGCATGATTCAAGTAGTTGAAAAGAGTTCATCAGGAAGAATTAGAAGTTGCCAAATGCACAACCTCATGAGGGAACTTTGTGTTGAGAGGGCACATTTGGAAAACTTTCTTCAGGAGATCAATTCCCGGAATGTAGATGAATCTAGAGGGACATCAAGAGCAAGGTCAGTGGGAAAAGTTCGCAGGATTGCCTTGTTTTTGGATCAAGATGTTGATAGGTTCTTCCCTTCAGAACTGAAAAGCCACCACCATTTAAGGTCTCTTCTTTGCTTCCATGAAAAGACAGCTAGGCTCAGTGAATGGGGTTTGATGAAGTCATTTTTCAAAAAATGTAGGTTACTCAGAGTCCTGAACTTGGAAGGAATGCAGGGTCTGGGAGGGAAGTTGCCAAAAGAAATTGGCTATTTGATCCACCTAAGGTTTCTCAGTCTCAGAAATACCAAAATTGATGAGTTGCCCACATCAATAGGTAATTTAAAATGCTTGATGACCCTGGATCTTCTAACGGGGAATTCAACTGTGCAAATACCAAATGTCATAGGTAACATGCAAAAAATGAGACATTTATATCTACCAGAGTCTTGTGGTAATGGCATTGAAAGGTGGCAACTGGACAACCTGAAAAACTTGCAGACACTGATTAACTTCCCTGCAGAAAAGTGTCATGTAACAGATCTCATGAAATTAACCAATTTGAGAAAGCTAGTGATTGATGATCCTAACTTCGGAGGTATCTTTAGGTATCCTAATGTGCAATTTAGGCACCTAGAGTCATTGTTTTTTGTTAGTTATGAAGATATATCAGTTGTCCATGTTGCATTAGGATGTCCCAATCTTTACAAACTGCACATAGAAGGACCTATAAAGAATTTTCCTGAACCCCACCAACTTTCTTCCAAGCTTCTGAAGCTAAAGTTGACGGGTTCTGGACTTCTTGTAGATCCGATGCCAACATTAGAGAAGCTTCCAAATTTAAGGTTGCTTGAGCTACAACTTGATTCATTCGTAGGCAAGCAACTGCATTGTTCCAGCAAAGGCTTTGCTCAACTCAAGTCTCTGGTTATCCATGATTTGTTCAATCTTGAGGAGTGGAGGTTGGATAAAGGAGCCATGCCTTGTCTTAGAGAACTTAAGATTGAAAATTGCACCAAGCTTGAGAAGGTTCCAGATGGGCTCAGATTTCTTACCACTCTTCAGCATCTGGAGATCAGATCAATGTTTGCAGCATTCAGAACCAAACTTGAAAAAGGAGGAGAGGATCACTACAAAATCCAACATGTGTCAGCTGTGGTTTTTTGTTACTGTGACTATTAG 2757 0.4168 MAQAVVSFIVQSLGDLLIQEAVFLYGVEDQVLQLQTELRMMRSYLQDADRRQDENESLRSWISEIREAAYDSDDVIESYALREASRRNLPGVSNLIRRYASIINRFIEIHMVGSHVGNVKARISSLTRSLKTYGIKPEKEEPSNSMHGRQNLRRSYSHVIEEDIIGVDDDVKKLESYLVDPSKRVVAICGMGGLGKTTLAKKVYHSVDVRNSFKSRAWAYISQHCQARDVWIGILFRLISPSQEQRQEIDNMRDEELAKMLYQVQMEKSCLVVLDDIWNAETWSKLKPAFPHGTSVSAVGSKILLTSRNIDVAFQMDPSCYLHTLKCLNEVDSWELFQKKSFLKIDDPDYGEKEKLGREMVGRCGGLPLAIIVLGGLLASKPTFFEWDTVCQNINSYLRRANGKEQRLEEVLALSYYELPYQLKPCFLHLAHFPENLEIPTKKLIRIWVAEGIISLAHSEGEGEEALEDVAQRYLTELVERCMIQVVEKSSSGRIRSCQMHNLMRELCVERAHLENFLQEINSRNVDESRGTSRARSVGKVRRIALFLDQDVDRFFPSELKSHHHLRSLLCFHEKTARLSEWGLMKSFFKKCRLLRVLNLEGMQGLGGKLPKEIGYLIHLRFLSLRNTKIDELPTSIGNLKCLMTLDLLTGNSTVQIPNVIGNMQKMRHLYLPESCGNGIERWQLDNLKNLQTLINFPAEKCHVTDLMKLTNLRKLVIDDPNFGGIFRYPNVQFRHLESLFFVSYEDISVVHVALGCPNLYKLHIEGPIKNFPEPHQLSSKLLKLKLTGSGLLVDPMPTLEKLPNLRLLELQLDSFVGKQLHCSSKGFAQLKSLVIHDLFNLEEWRLDKGAMPCLRELKIENCTKLEKVPDGLRFLTTLQHLEIRSMFAAFRTKLEKGGEDHYKIQHVSAVVFCYCDY 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00288 918 SUPERFAMILY L domain-like 539 886 - -
Vian4g00288 918 Gene3D Ribonuclease Inhibitor 531 904 IPR032675 -
Vian4g00288 918 FunFam Probable disease resistance protein At5g66910 327 415 - -
Vian4g00288 918 CDD RX-CC_like 2 128 IPR038005 -
Vian4g00288 918 FunFam Probable disease resistance protein At1g63360 416 510 - -
Vian4g00288 918 PANTHER DISEASE RESISTANCE PROTEIN RP 33 865 IPR044974 GO:0006952
Vian4g00288 918 Gene3D - 5 112 - -
Vian4g00288 918 Pfam Rx N-terminal domain 5 87 IPR041118 -
Vian4g00288 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 430 IPR027417 -
Vian4g00288 918 Gene3D - 415 512 IPR036388 -
Vian4g00288 918 Gene3D - 147 321 IPR027417 -
Vian4g00288 918 Gene3D - 327 414 IPR042197 -
Vian4g00288 918 FunFam Probable disease resistance protein At1g61300 146 319 - -
Vian4g00288 918 Pfam NB-ARC domain 169 416 IPR002182 GO:0043531
Vian4g00288 918 PRINTS Disease resistance protein signature 801 817 - -
Vian4g00288 918 PRINTS Disease resistance protein signature 264 278 - -
Vian4g00288 918 PRINTS Disease resistance protein signature 364 378 - -
Vian4g00288 918 PRINTS Disease resistance protein signature 185 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00288 Vian-Chr4 3134342 3137739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00288 606 886 Receptor kinase-like Gene Family AT3G28890 26.370 4.48e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00288 - - gmx:100305356 1467.98