Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00257 ATGGCATTTGCATATGAACAATTTCTTCTTTTGTTGATGGCTTTTTCAACATGTTTCTCATCAACTAGCAGCAATTCATCTGTTAAACCTCAAAGACTGGTCTCCAGACTCATTCACCCTGGCTCAATTCATCATCCTCACTACAAGCCACATGCAACAGCTCAAGACCGAATTCAACTTGATATCCAACACTCAGCAGCACGTTTAGCCTACATTCAAGCAAGGATAGAAGGTTCTTTGGTCTCTAATAATGACAACAAAGCTAGTGTTTCTCCCTCTTTAACTGGTAGAACCATACTGGCCAATATCTCAATAGGCCAACCCCCTATCCCACAACTAGTTATTATAGACACTGCCAGTGACAGCTTCTGGATCATGTGCTCCCCTTGCACAAATTGTGACAACCATTTAGGACCACTCTTTGACCCCTCAAAGTCTTCCACCTTTTTCCCACAGTGCAAAATACCATGTCTCTTCAAGGGTTGCAAATGTGACCCTATTCCATTTCGTGCATCTTATGCAGATGGCTCCACAGCTTCAGGAACATATGGTCGTGATACTGTTGTCTTTGAGACAACTGATGAAGGTACCTCTAAGATATTAGATGTACTATTTGGATGTGGCCACTACATTGGATACGATTCAGATCCAGGACACAATGGAATACTAGGACTAAACAGTGCAGTTGAATCTTTGGCAACAAAAATTGGTAGAAAGTTTTCTTACTGCATAGGCAACCTGGCTGACCCTCATTACAATTACAACCAACTGATATTAGGTGAAGGGGCAGATCTTGAAGGTTTTTCCACCCCTTTTGAAGTCCACAATGGCTTTTATTATGTCACCATGGAAGGCATAAGTATAGGGGAGAAAAGGCTTGACATAGCTCCAAGAACTTTTGAGATAAAAGAGAATGGCACAGGAGGAGTCATCATTGACACAGGTAGCACTATCAGCTACCTAGTTGATAATGTGCATAAACTAATCTACAAAGAAGTTAGAAATCTCATTGGTAGGTCCTTTAGAGGAGCAATAATTGAAAATTCCCCGTGGATGTTGTGTTATTATGGTAGTATCAACAAAGATCTAGCTGGGTTTCCAGTGGTTACATTTCATTTTGCTGAAGGAGCAGATTTGGCTATGGATTCTGGAAGCTTTTTTAGTCAAGTCAGTAATGACATATTCTGCATGACTATAGGTCCAGCCAGTAACATCGACATTAAAAGTAAGCCTTCAGTGGTTGGATTGTTAGCCCAACAGAGCTACAATGTGGGATATGACCTTGTTAATAACTATGTTTACTTTCAAAGAATTGATTGTGAACTTCTTAGTGGTTGA 1338 0.4051 MAFAYEQFLLLLMAFSTCFSSTSSNSSVKPQRLVSRLIHPGSIHHPHYKPHATAQDRIQLDIQHSAARLAYIQARIEGSLVSNNDNKASVSPSLTGRTILANISIGQPPIPQLVIIDTASDSFWIMCSPCTNCDNHLGPLFDPSKSSTFFPQCKIPCLFKGCKCDPIPFRASYADGSTASGTYGRDTVVFETTDEGTSKILDVLFGCGHYIGYDSDPGHNGILGLNSAVESLATKIGRKFSYCIGNLADPHYNYNQLILGEGADLEGFSTPFEVHNGFYYVTMEGISIGEKRLDIAPRTFEIKENGTGGVIIDTGSTISYLVDNVHKLIYKEVRNLIGRSFRGAIIENSPWMLCYYGSINKDLAGFPVVTFHFAEGADLAMDSGSFFSQVSNDIFCMTIGPASNIDIKSKPSVVGLLAQQSYNVGYDLVNNYVYFQRIDCELLSG 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00257 445 CDD pepsin_A_like_plant 100 440 IPR034161 -
Vian4g00257 445 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 310 321 IPR001969 GO:0004190|GO:0006508
Vian4g00257 445 Gene3D Acid Proteases 83 258 IPR021109 -
Vian4g00257 445 PANTHER OS07G0603500 PROTEIN-RELATED 36 441 - -
Vian4g00257 445 FunFam Aspartyl protease family protein 263 442 - -
Vian4g00257 445 ProSiteProfiles Peptidase family A1 domain profile. 99 436 IPR033121 -
Vian4g00257 445 Pfam Xylanase inhibitor C-terminal 279 436 IPR032799 -
Vian4g00257 445 Gene3D Acid Proteases 266 443 IPR021109 -
Vian4g00257 445 SUPERFAMILY Acid proteases 100 440 IPR021109 -
Vian4g00257 445 Pfam Xylanase inhibitor N-terminal 101 260 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00257 Vian-Chr4 2732874 2734211 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00257 - - vum:124821182 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00257 4 2732874 2734211 Vian4g00257 4 2732874 2734211 ECH