Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00173 ATGGCACCGCCCCGAGAGCTTCAGGGCTTTTACTATGATCCTGAGAAGAACAGGTATTTCCCCATCAAAGGCCCCATTCCGGGCTCTTCTTCTAAACCCAAGAACCCTACTCCCAAAGGTCCTCAAACCCCTTCCAATCAGTTACAGAGTGGTAGGAGTTCTTGCAGGAAGCTCAGAAACAGAACCTTGCCGAAGCTGCTTCAGGCTAGAGAGTTGGAGGGTCGCCATGTCATTTATCCTCATTATTGCAGATGTAACTTTGCCGATGAATATGAGAAAATTCAAGCATCTAAACCTGTGGTCTGGAGATACCGGGGAACAGATAAGATGGGTGTTTGTGCTTTGAAACACTTGCGCGTTGATGTGCAGACTTTGCAGGGGCAAATTGAAACTGATGTTTTATTGACGGGCAGCATAAATGGCTCCTTGAGTTTTTCTGAAGTTGGAGGGGTTGGGCAATATTTTGATGACGGGACAAAATGGATAGCAGATTGTGTGAGGAATTTTGTTAAAGGGAAAACATTTGAGCGTGATGAAGTGCGTAAGCCAGTTTTCAGACCTAATCGAGCTGCATTGCTTATGCCCTCCAGAATATCTTGTATAAGGTTGGGTCCAAAGTGCTCTCCTCAGGCAGAGAATGATGGTTCTGTTGCAGGACGTGTTTTATTTACTACACTGGGATCAGAAACGTCAGGTGGATCCGTTTATACTCTTGGTCTTGTTGAACCGTTAAATCTTGGACCAGGTATACTGAACACGTGGAGTGGACTTGAGGAAATTGCTTCTTTCAGATGTACCCTTTGGACAGCAGAATATGATTATAATAGACACCGGGCTGTAATTGGTACAAGTTTAGGAGGTGCTTCAGTGGATCTGGAAACCAGGATGGAAACATGGTTTTTACGTTGCAAAAGTGATGTTTTTGCACAACAAATTATTAATTCTGGAAATGTGATTTTATGTGGGCTTAGAAATGGGGCCATTGTCACTGCAGATTTTCGTGAGAAAAGAGAAAGTCTTTCTGATAGACTTATTAGCCATCGGATACCATATAGTTCAAGCATTGGAGGGTGTAAAAAGGAATGGTTGAAGCTCAAAGGAGACATATTTCCTTCCCACACAATTAGGATGCCTTCATCTATATCTTCTTTGGTGTCACTTCAGTTTGATGAGCAGTACTTTCTAGCTAGCGCAATGGATGGATCGATTAGGCTATATGATCATCGTCTACTTCAGAGGGGTGCTGTTCAAAGTTATGAAGGGCATGTGAATTCTCATACTCGTATACAACTTGGTGTCGACCCAACTGAGAGATTTGTTACGTCAGGTGGAGAGGATTGCAAACTACGGTTATGGAGTCTCAAGTCTGGTGAATTGATTTTTGAGGAGAAGTTCTCTGATTCAATTATCTCAACTATGTGCTATAAAACATACAGTAGTTGTAAAGCAGAAGAGGGAAACCAATACAAGCTTGACTCCTCTCAGGGTGCATGGCTTGGATCACATGAAGGACTGTTTTATATGCGCTGGTGA 1533 0.4299 MAPPRELQGFYYDPEKNRYFPIKGPIPGSSSKPKNPTPKGPQTPSNQLQSGRSSCRKLRNRTLPKLLQARELEGRHVIYPHYCRCNFADEYEKIQASKPVVWRYRGTDKMGVCALKHLRVDVQTLQGQIETDVLLTGSINGSLSFSEVGGVGQYFDDGTKWIADCVRNFVKGKTFERDEVRKPVFRPNRAALLMPSRISCIRLGPKCSPQAENDGSVAGRVLFTTLGSETSGGSVYTLGLVEPLNLGPGILNTWSGLEEIASFRCTLWTAEYDYNRHRAVIGTSLGGASVDLETRMETWFLRCKSDVFAQQIINSGNVILCGLRNGAIVTADFREKRESLSDRLISHRIPYSSSIGGCKKEWLKLKGDIFPSHTIRMPSSISSLVSLQFDEQYFLASAMDGSIRLYDHRLLQRGAVQSYEGHVNSHTRIQLGVDPTERFVTSGGEDCKLRLWSLKSGELIFEEKFSDSIISTMCYKTYSSCKAEEGNQYKLDSSQGAWLGSHEGLFYMRW 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00173 510 SUPERFAMILY WD40 repeat-like 291 474 IPR036322 GO:0005515
Vian4g00173 510 PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED 1 510 - -
Vian4g00173 510 MobiDBLite consensus disorder prediction 41 55 - -
Vian4g00173 510 SMART WD40_4 368 407 IPR001680 GO:0005515
Vian4g00173 510 SMART WD40_4 412 453 IPR001680 GO:0005515
Vian4g00173 510 Gene3D - 263 500 IPR015943 GO:0005515
Vian4g00173 510 MobiDBLite consensus disorder prediction 1 55 - -
Vian4g00173 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 419 462 IPR001680 GO:0005515
Vian4g00173 510 Pfam WD domain, G-beta repeat 416 453 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00173 382 478 Miscellaneous Gene Families AT5G08390 26.263 3.81e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00173 K11799 - gmx:100798753 822.002