Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00169 ATGCAATTTGCATGCTCACACACTCACAACCTCACTTCACTCTCTCATCTCAATTCAATTCAACTCAACACGACACAGAACAGAACACAACAAACAAAACAACCACTAACTAACACCGCAGACCACCGTCCAATTCTCAATCCGGCAACACTGCTCAACACAATGCGTTCTCGATCTCACCATGGAATTTCGATTACCCAAAATGCCCTCGCCCTGCTTTATTTATTCTGCATCCTCACCAACCCACCTGCGTCCACGGCTCTCAACTTCACCGCGCTGCTCTCCACCGTCCCGGACCTCTCCCAATTCACCGCGCTCCTCGCCTCCGCGACGCCTATAACGGCGGATCTCTCCGACCGCTCCTCCCTCTCCATCCTCGCCGTCCCCAACGCCTTTCTCGCCGCCGATGACCACCTCGCCCGCCACCACCTCTCCCCCGCCGCCCTTGCTGATGTCCTACGCTACCACGTCCTCCTCCAGTTCCTCTCCTGGTCTGACCTCCGCGCCCTCCCCTCCTCCGGGAAACTCGTCACCACGCTCCTCCAGACAACCGGACGCGCTACCGACAACTTCGGCTCCGTGAACCTCACGCGCGACCCCCAATCCGGCCTCGTCTCGATCCGCTCCCCCGCCCCTTACTCCCCCTCAAACGTCACCGTTTTGTCCCTCGTCAAAACCCTACCCTACAATGTCACCATCTTCGCCGTCAATTCCCTCCTCATTCCCTACGGCCTCGACCTCATGGCGTCCGAAACCCGCCCCAACATCGTCCTCAACATCACCAAAGCTCTAATCGACGGCCACAACTTCAACGTCGCCGCCTCAATGCTCGCGGCCTCCGGCGTAGTTCAGGAATTTGAGGCTGATGAGGGTGGTGCTGGAATCACTCTTTTCGTACCGGTGGATGATGCCTTTGCTGATCTTCCACCCTCTGTGGCCCTTCAGTCTCTACCTGCAGATAAAAAAGGGGTGGTTCTTAAATTCCATGTCCTCCATTCCTATTACCCTCTTGGCTCGCTTGAATCGGTTGTTAACCCCTTCCAACCCACCCTCGCCACTGAGGCCATGGGTGCTGGTAGTTTCACACTCAACATTTCGCGTGTGAATGGCTCTGTTGCCATCAACACCGGCATTGTACAGGCCTCAGTCACGCAGACCGTCTTTGATCAGAACCCTGTTGCCATTTTTGGGGTTTCCAAGGTTCTCTTGCCGAGGGAGATTTTTGGCAGGAATCCTACTGTCACTGCCAAGCCTATTGAAGGTGCTCCTCCGCCAGATGAGGATGCGCTGTCACCAGAGAATTCGCCGGGATTAGATGGACAGCCCTCGCATCTATCATCACCGCCGGGGTTTCGCGAAGATGTGCGGTCACATGGTGGTGGTATAGGATTGTCCTTTGCTGTTGTTTTTTGCTGTATAGGATTGTATCTTGTGGTATAG 1440 0.5535 MQFACSHTHNLTSLSHLNSIQLNTTQNRTQQTKQPLTNTADHRPILNPATLLNTMRSRSHHGISITQNALALLYLFCILTNPPASTALNFTALLSTVPDLSQFTALLASATPITADLSDRSSLSILAVPNAFLAADDHLARHHLSPAALADVLRYHVLLQFLSWSDLRALPSSGKLVTTLLQTTGRATDNFGSVNLTRDPQSGLVSIRSPAPYSPSNVTVLSLVKTLPYNVTIFAVNSLLIPYGLDLMASETRPNIVLNITKALIDGHNFNVAASMLAASGVVQEFEADEGGAGITLFVPVDDAFADLPPSVALQSLPADKKGVVLKFHVLHSYYPLGSLESVVNPFQPTLATEAMGAGSFTLNISRVNGSVAINTGIVQASVTQTVFDQNPVAIFGVSKVLLPREIFGRNPTVTAKPIEGAPPPDEDALSPENSPGLDGQPSHLSSPPGFREDVRSHGGGIGLSFAVVFCCIGLYLVV 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00169 479 Gene3D FAS1 domain 258 405 IPR036378 -
Vian4g00169 479 Gene3D FAS1 domain 80 242 IPR036378 -
Vian4g00169 479 SMART fasc_3 296 405 IPR000782 -
Vian4g00169 479 ProSiteProfiles FAS1/BIgH3 domain profile. 87 240 IPR000782 -
Vian4g00169 479 SUPERFAMILY FAS1 domain 264 404 IPR036378 -
Vian4g00169 479 FunFam Fasciclin-like arabinogalactan protein 4 258 405 - -
Vian4g00169 479 FunFam fasciclin-like arabinogalactan protein 4 87 242 - -
Vian4g00169 479 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 69 452 IPR033254 -
Vian4g00169 479 Pfam Fasciclin domain 269 404 IPR000782 -
Vian4g00169 479 MobiDBLite consensus disorder prediction 413 452 - -
Vian4g00169 479 SUPERFAMILY FAS1 domain 86 243 IPR036378 -
Vian4g00169 479 ProSiteProfiles FAS1/BIgH3 domain profile. 257 402 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00169 Vian-Chr4 1541133 1542711 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00169 - - pvu:PHAVU_009G244800g 775.778