Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00160 ATGGATCCAAATCCTGATGCAATTAAGGAGGATTTGAACCGGTTTAGGTATTCTGTCAGTGAAAATTTCAACAAAGTTCAAAAGCTTGAAGAACAAGTTGCTGAGGTTGAAAAGTTCTACCTTTCGACTAAAGCTCAAGTTAATAGTGTCAAAGACAAAGGCCGGGAGAAGCTTGTTATTGGCAGTAGAAGGTCACAGCAAGGTGCATCAAGTAAGGAACCTAATTCTTCAAACGCAATGCAAGAGATAGCCGAGCATAAATGGGCTTGGCCCTTCTTGGAGCCTGTAGATGTTGAAGGTCTTGGGTTGCATGACTATCATGAGATTATTGCGAAGCCTATGGATTTCAGTACGATAAAAAAGAAAATGGATGCCAAGGATGGTTCTGGTTATAAGAACGTGCGTGAGATATATTCTGATGTCAGGTTGATTTTTAAGAATGCAATGAAATACAACAACGAAAAACATGATATCCACATTATGGCAAAGTCATTGCTTGAAAAATTTGAAAAGAAATGGCTGCAGCTGTTGCCTGAAGTTGCTCATGCGGAAAGTGAACAATTAAAGGAAGAAGCACATATGCAGTTGGAAAAGCAGCTTGCTCAAGAAGCTACTTATGCCAATATGGCAAAGGATATAAGCCTTTCGCTATGCGAGGTTGAGGTGCACTTAAAGAATCTCAAAGAAATGGTCATTGAAAAGTGCAGGAAAATATCGATTCGTGAGAAACTGGAACTTGTTAAGTCTTTCAGCAGACTGAATTTTGAAAATCTCAACAAGGCATTGCAGATAATTTCTGAGAATGACCCAACCTTCAAACCTAATGATCTAGAAGTGAACCTTGACCTTGATAATCAGACCGACTACACAGTATGGAAACTAAACGTTTTTGTCAAAAAAGCACTGGAAGAACAGGGAAAAAATGCTGCTGAGGAGCTAAATGTTAATCACAATGTACACAAGGCATTATCTTAG 975 0.3897 MDPNPDAIKEDLNRFRYSVSENFNKVQKLEEQVAEVEKFYLSTKAQVNSVKDKGREKLVIGSRRSQQGASSKEPNSSNAMQEIAEHKWAWPFLEPVDVEGLGLHDYHEIIAKPMDFSTIKKKMDAKDGSGYKNVREIYSDVRLIFKNAMKYNNEKHDIHIMAKSLLEKFEKKWLQLLPEVAHAESEQLKEEAHMQLEKQLAQEATYANMAKDISLSLCEVEVHLKNLKEMVIEKCRKISIREKLELVKSFSRLNFENLNKALQIISENDPTFKPNDLEVNLDLDNQTDYTVWKLNVFVKKALEEQGKNAAEELNVNHNVHKALS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00160 324 MobiDBLite consensus disorder prediction 63 78 - -
Vian4g00160 324 SUPERFAMILY Bromodomain 78 180 IPR036427 GO:0005515
Vian4g00160 324 PANTHER OSJNBA0053K19.4 PROTEIN 9 307 - -
Vian4g00160 324 PRINTS Bromodomain signature 87 100 IPR001487 GO:0005515
Vian4g00160 324 PRINTS Bromodomain signature 103 119 IPR001487 GO:0005515
Vian4g00160 324 PRINTS Bromodomain signature 140 159 IPR001487 GO:0005515
Vian4g00160 324 SMART bromo_6 32 178 IPR001487 GO:0005515
Vian4g00160 324 Gene3D - 36 199 IPR036427 GO:0005515
Vian4g00160 324 Gene3D - 232 308 IPR038336 -
Vian4g00160 324 MobiDBLite consensus disorder prediction 52 78 - -
Vian4g00160 324 ProSiteProfiles Bromodomain profile. 84 159 IPR001487 GO:0005515
Vian4g00160 324 Pfam Bromodomain extra-terminal - transcription regulation 238 300 IPR027353 -
Vian4g00160 324 Pfam Bromodomain 77 163 IPR001487 GO:0005515
Vian4g00160 324 ProSiteProfiles NET domain profile. 228 309 IPR027353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00160 Vian-Chr4 1441215 1446982 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00160 - - gmx:100795037 429.098