Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00127 ATGTTAGACCTCAAAAACATATGGGTGCTTGTTTCTATCAACAGGTTCATTCAAGACACCTTGGAAGATGAGAAGACCAGGAATGGTCTGAAATTGAGATGCACCTCCAAGTTAAGGATTCAAAAGCAGGAGTTTTTTGAATTCTCTGAGCAGTCGGTGTTGTCCAATCTTTACTGGGGCATTGACAGCATTGAGGCCGCCATTGAAGCTCAACAGCCAGAAGATAGATCCTTCAGGCTAATGAACTCAGAACAAATGCTTCAGGTGCCAGCAATGCTTGATGAGGAAGAGGTCACAGCCACAATTCCAAACCGTTACTTGGTGTGCTGCTCCTACTTTTACCTCTCAGTGGTTAGGAAGCTCCAGGGAGATGAGTGGCAGGCAGCACTGCATTTTCTCCAAGCAGTGTTGGTATCACCAAGGCTTGTTTGGACAGAATTTGCAGCACAACTTTGCGAAAGTCTTTTCCCCCAATCGAGCATTCGCATGGTGCAGGGTAACTGCAGCAGTAGAAGTTTGGAATCTGTGTCTTCTGAAGATGAAATGGATGAAGCAATTAGGGAGGTGGCAAGGAGGTACAAGGAATGTCTGGTGTATTACCAGGTCATGCTTTATGGAGAAACTCCATGGTGGCGCAGTTATTGCAGCAAACAATCACCACGTTCTGTGGATGTGCCAAATACTAGCTGTGTTTCTCCAACTTCAGTTCAACATGAATCAAGATTGAAAAGTTGCAATATGTATAAAAAAGTTCATCCTCTTGATTCTCAAGATGTGATGCATATAATGGAAAATGAATCAAATCAATTCATGGATATTGCTGAATACGAAGGTGATAAGAAGGCCCTTAAACAACTTAAGTCAGTTGAGTATCACGACAAAGAGATCCAAACAATTTCAAGTATCAAAGATATGATGATAGAGGTACACTCTAAGACACCAGTGTCAGTGGATGCATTCTATAAGGATTTTAGAGCCAGAAAGAACATGGAAAATGTGGATGACAGAAAAATTTATATACAGACCACAATAACTACAGCAGATGATCTACCACCAGAAATCCACAACTGGAAGCTACAACAACACTCTGGTTTGCCTCAAGCTCATCAACATCCTATTCAAGAACAGTTGGACATGAAAAACATAATTAAGCTTGATTCTAGTAGATTCAACAGGTCCATAGAAGATATTACTTTATCTATCTCAAAATACAGAGATAAAACTGGAAATACTCCCTTAAATTGTCTTGGAGAGGATGAATTAAATGAGGAAGCATTGAAGCCAAAAAAATTGTTCGATCATGTAACATTTACACCTGCTTGCAAACATAGGCCCAGCCAGAAAAATCAGGAAAATTCCGAGACACAAAGAGTGTATAGCCTATCAAAGTTTGATGAACTTTGTCCAAGCTCCAGAAGATATTCCCTGCAAGACTTGTCAGAACTGACTGAAAGGAGGATTAGAGAACTACACTATTCAGAGGTATTAGGAAAATGTGATGAAGAATATACTGTAGACATTGCATCAATTTATGAGAGCCTGATTAATTCATCCGGCGCTACTTATGCTTCCTTAAAGGATGTGATTTTGGATGAGCTGCTAATAGCTATCTCTACTTCCAAAGAGGAAAGAAAAATAAGGGCATCAGTGTCTATTCTGACAACAATAATTTCAAGGAACAAGTCAATCATAGAAGATGTCAAGAAGAAAGGTTTAAGGTTGTGTGATCTGGCAAGTGCTCTAAAACAAAATGTCCATGAGGCAGCAATTCTAATTTATTTGATAAATCCTTCACCTATAGATATAAAAACATTGGAACTTCTGCCAATATTAGTGGAGATTGTATGCACTTCAAATAGTTACAAGAATAGGCCAGAGTCACTTCTTTTGACACCTCATGCAGCATCCTTGATGATCATTGAAGAGCTAGTAACTTCATTTGACTATGCCACAAATAACATGCATTTGGCTACCATCAGTTCTCCTCATGTTCTCAGTGGATTTCTAGAAGTTGCCAGGAATGATAACCTAGAAGAATTTTTTTCTTTAACCACCATTCTTATAAAATGCATGCAATATGATGCCCAGTGCAGACAGTATGTATCACAGTTCACTCCACTTGCTCCCTTTATCCACCTTTTGCAGTCAGAAAATATCCGCGCCAAAAGCACGGCTCTTGAGTTTTTTCATGAAATCCTTTGTATACCACGATCGTCGGCTATTAGTCTGCTGCAACGAGTACAGCAAGAAAGAAGCATCAATATTATGCAGACACTAATGCATTGTGCACATCAGTTACAACCTGATCACCAGCTTTTAGCAGCAAATATTTTGCTTCAGTTAGACATACTGAACTCTCCTGATAAAGGTGTGTTTAGAGAAGAAGCAGTGCAAATCCTTCTCAGGGCAATGACATCAGAAGAAAGCTCAGAGCAGATATTATCTGCATCCATTCTATCAAATCTGGCTGGTACGTATGCTTGGACAGGAGAGCCATATACAACTGCATGGTTGTTGAGAAAGACAGGTTTGACCTCTTCCTATCACCAGAATATGATAAGGAACTTCAACTGGTTGGATCCGAGTCTACAGGATACTAGCACAGATTTGTGGTGCAGTAAAATTGCAAAATGTATCATAAGCCTTGGGGATTCTGTCTTCCATACTTTAGATAGGGTTCTTAGAAGCAAGATAAAGAGGGTTTCTAGAGATTGCCTTGTAGCAATTGCATGGCTTGGATGTCATATAACAAAAAATCCAGACAGCATCAGTTATTCTGCATCTGAGATTATACTAAGTGGAGTTGAGCAGTTTCTGCATCCTGGGATGGAGTTGGAGGAAAGACTTCTAGCATGTATGTGCATGTTTAATTATGCCTCCGGAAAAGGAAAGCAAAAACTGATGCATTTCTCCGAAGGAGTAAAGGAATCACTAAGGCGCCTTTCAAATGTTATTTGGATGGCTGAGGAACTACATAGAGTAGCCGATTTCTTGCTCCCAAACATATCACGTATTTCTTGCGTTCACACACAAATCCTTGAGGCAGGTTGCAGCTTCAGTTTAGCAGTTTGCTCCCTCATCTACTTCAAGGGCTTGCTGTTCAGTGGGTATTCAGATGGAACAATCAAGGTTTGGGATATTAGGGGACACTCAGCAAGTCTTATATGGGACATTAAGGAGCACAAGAAGTCTGTGACATGCTTTTCACTTTATGAACCATCTGACTGCCTAATAAGCGGATCCCTTGATAAAACCATAAGGGTGTGGAAAATGATCCAGAGAAAGCTGGAATGTGTTGAAGTTATAGCATTGAAGGAACCAATTCATCATTTGCGAGCACATGGTGAAACAATTTTTGCTGTTGCAGAAAGCCAGGGACTAAAGCTAGTTAATGAATCAAGAGTGACCAGAGATATTCTCAAAGGTAAGCATGTGAAGTGCATGACGGTGGCTCAAGGAAAGTTATACATTGGATGCACGGATTCAAGCATACAGGAGTATTCCACAACACACAACCGCGAACTAGAGATCAAACCCCCTACAAGGAGCTGGAGGAAGAAAAGTAAGCCCATCAATGCAGTTGTAGCATATAGAGACTGGCTCTACAGTGCAAATAAGCAAGTTGAAGGCACAACATTCAAGGAATGGAAAAAAACTAGGAAACCAAAACTTTCAATTCTTACTGACAAAGGAGATAATGTGGTGGCCATGGAAGTGGTAGAAGACTTCTTGTACCTAATCTCCAGCTCTTCACCAAACAATATTCAGATATGGTTGAGAGGGGCACCGAAAAAGTTGGGGAGAATATCAGCAGGAAGCAAGATAACAAGCATCCTTGCAGCCAATGACATCATTTTTTGTGGTACTGAGACAGGACTAATCAAGTCATGCTGTGATGCCATTGCAAAACTACCTTGTGATGCAGATAAGATTGCAACAGCCAAAGGCTTAGCTTAA 3957 0.4043 MLDLKNIWVLVSINRFIQDTLEDEKTRNGLKLRCTSKLRIQKQEFFEFSEQSVLSNLYWGIDSIEAAIEAQQPEDRSFRLMNSEQMLQVPAMLDEEEVTATIPNRYLVCCSYFYLSVVRKLQGDEWQAALHFLQAVLVSPRLVWTEFAAQLCESLFPQSSIRMVQGNCSSRSLESVSSEDEMDEAIREVARRYKECLVYYQVMLYGETPWWRSYCSKQSPRSVDVPNTSCVSPTSVQHESRLKSCNMYKKVHPLDSQDVMHIMENESNQFMDIAEYEGDKKALKQLKSVEYHDKEIQTISSIKDMMIEVHSKTPVSVDAFYKDFRARKNMENVDDRKIYIQTTITTADDLPPEIHNWKLQQHSGLPQAHQHPIQEQLDMKNIIKLDSSRFNRSIEDITLSISKYRDKTGNTPLNCLGEDELNEEALKPKKLFDHVTFTPACKHRPSQKNQENSETQRVYSLSKFDELCPSSRRYSLQDLSELTERRIRELHYSEVLGKCDEEYTVDIASIYESLINSSGATYASLKDVILDELLIAISTSKEERKIRASVSILTTIISRNKSIIEDVKKKGLRLCDLASALKQNVHEAAILIYLINPSPIDIKTLELLPILVEIVCTSNSYKNRPESLLLTPHAASLMIIEELVTSFDYATNNMHLATISSPHVLSGFLEVARNDNLEEFFSLTTILIKCMQYDAQCRQYVSQFTPLAPFIHLLQSENIRAKSTALEFFHEILCIPRSSAISLLQRVQQERSINIMQTLMHCAHQLQPDHQLLAANILLQLDILNSPDKGVFREEAVQILLRAMTSEESSEQILSASILSNLAGTYAWTGEPYTTAWLLRKTGLTSSYHQNMIRNFNWLDPSLQDTSTDLWCSKIAKCIISLGDSVFHTLDRVLRSKIKRVSRDCLVAIAWLGCHITKNPDSISYSASEIILSGVEQFLHPGMELEERLLACMCMFNYASGKGKQKLMHFSEGVKESLRRLSNVIWMAEELHRVADFLLPNISRISCVHTQILEAGCSFSLAVCSLIYFKGLLFSGYSDGTIKVWDIRGHSASLIWDIKEHKKSVTCFSLYEPSDCLISGSLDKTIRVWKMIQRKLECVEVIALKEPIHHLRAHGETIFAVAESQGLKLVNESRVTRDILKGKHVKCMTVAQGKLYIGCTDSSIQEYSTTHNRELEIKPPTRSWRKKSKPINAVVAYRDWLYSANKQVEGTTFKEWKKTRKPKLSILTDKGDNVVAMEVVEDFLYLISSSSPNNIQIWLRGAPKKLGRISAGSKITSILAANDIIFCGTETGLIKSCCDAIAKLPCDADKIATAKGLA 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00127 1318 SUPERFAMILY ARM repeat 655 983 IPR016024 -
Vian4g00127 1318 SMART WD40_4 1051 1090 IPR001680 GO:0005515
Vian4g00127 1318 SMART WD40_4 1220 1259 IPR001680 GO:0005515
Vian4g00127 1318 SMART WD40_4 1006 1046 IPR001680 GO:0005515
Vian4g00127 1318 SUPERFAMILY WD40 repeat-like 1025 1296 IPR036322 GO:0005515
Vian4g00127 1318 Gene3D - 1001 1314 IPR015943 GO:0005515
Vian4g00127 1318 ProSiteProfiles Trp-Asp (WD) repeats profile. 1032 1048 IPR001680 GO:0005515
Vian4g00127 1318 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1058 1091 - -
Vian4g00127 1318 Gene3D - 529 1000 IPR011989 -
Vian4g00127 1318 ProSiteProfiles Trp-Asp (WD) repeats profile. 1058 1091 IPR001680 GO:0005515
Vian4g00127 1318 PANTHER OS04G0584500 PROTEIN 2 999 - -
Vian4g00127 1318 Pfam WD domain, G-beta repeat 1057 1090 IPR001680 GO:0005515
Vian4g00127 1318 Pfam WD domain, G-beta repeat 1023 1046 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00127 - - gmx:100782870 2366.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00127 4 1168377 1176060 Vian4g00127 4 1168377 1176060 ECH