Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00106 ATGGACATGACAGAGAGAGTAAGTGTTCTTATTCTGTACGTTGCACTGGTTTATCATGTGGGTGCTGCAAAGAAAGTAATGCCAGTTGCAGGTCCTGATATCTACAAGAATAAAAACTTAGATCAGGATAAACTTGTTCCTGGGGAAAAGATAAACAATGTCATAAGCTTTGGAGCCAAAGCTAATGGCAAGTTTGACTGCACTCAGGCTTTCATGGATGCATGGCGAGCAACTTGCCACTCCAAAGTGCAAGCCAGGCTTCTGGTTCCAGTGGGAACATTTGTGCTTTCTTCCATGTTTTTCGCAGGTCCATGTTCTACTCCAGAGCCCGTAACGATCCAAGTTGTAGGCACCATTGCTGCTACAACAGATCTCAGTGAATATGAGAATAACGAATGGCTTCTGTTTGAGGACGTGGATGGTATAAAAATCATCGGTGGTGGTACTTTTGATGGTGTCGGTAAGAATTCATGGAAAACCGCTACCAACTGTAAAGAAGACCCCGACTCAACCTGCGTCAGAAACCCTTCTAGTATATATTTCCACAGAATTAAGAATGGAATTATACAGAACGTTAAATCCACAAACCCCAAAGGCTTTCACATATTTGTGACTAATTGTGCTAACATCAGACTCCGACGACTTAACCTCACTGCACCAGAAGAAAGCCCTAACACCGATGGAATTCATATTAGCCAATCAATCGATGTTGAAGTAGCCAAAAATACCATTGAAACTGGAGATGATTGCATTGCCATGTTACACGGATCCCACCAAGTTTCCATCAACAATGTCAATTGTGGTCCTGGACATGGTATAAGTATTGGTAGTCTTGGAAAGTACGAGGAAGAGCTAGAAGTGAAAGACATTCGTGTGAACAACGTGTCGATGGTTGGTACAGAAAATGGCGTGAGAATCAAGACATGGCCAGATCGGTATGCTGGCAATGCATCAAACATCACTTTCAGTGACATCACCATGCAAAATGTTAAAAACCCTATCGTCATTGACCAAGAATATCAATGCTCTTCAAAATGCAAGGTTGATGGTTCACTTGTAAAGTTACAAGATGTTGTTTTTTCTAATATAAAGGGAACCACTACTTCGCCAATTGCAGTGGATTTAAGGTGTAGCGACAAGTTCCCTTGTGAAAGTATTAAACTTGAGAACATAGGCCTGTCGCTTAAATCCAAGCCTACCGGATCTAGATGTGCCAACATTAAACCAATTTACGAGGGCTTGCAAAATCCACCAGGTTGTCTATAA 1266 0.4179 MDMTERVSVLILYVALVYHVGAAKKVMPVAGPDIYKNKNLDQDKLVPGEKINNVISFGAKANGKFDCTQAFMDAWRATCHSKVQARLLVPVGTFVLSSMFFAGPCSTPEPVTIQVVGTIAATTDLSEYENNEWLLFEDVDGIKIIGGGTFDGVGKNSWKTATNCKEDPDSTCVRNPSSIYFHRIKNGIIQNVKSTNPKGFHIFVTNCANIRLRRLNLTAPEESPNTDGIHISQSIDVEVAKNTIETGDDCIAMLHGSHQVSINNVNCGPGHGISIGSLGKYEEELEVKDIRVNNVSMVGTENGVRIKTWPDRYAGNASNITFSDITMQNVKNPIVIDQEYQCSSKCKVDGSLVKLQDVVFSNIKGTTTSPIAVDLRCSDKFPCESIKLENIGLSLKSKPTGSRCANIKPIYEGLQNPPGCL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00106 421 PANTHER - 51 407 - -
Vian4g00106 421 FunFam Pectin lyase-like superfamily protein 41 418 - -
Vian4g00106 421 Gene3D - 44 418 IPR012334 -
Vian4g00106 421 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Vian4g00106 421 SUPERFAMILY Pectin lyase-like 49 421 IPR011050 -
Vian4g00106 421 SMART pbh1 317 338 IPR006626 -
Vian4g00106 421 SMART pbh1 207 233 IPR006626 -
Vian4g00106 421 SMART pbh1 234 277 IPR006626 -
Vian4g00106 421 SMART pbh1 287 308 IPR006626 -
Vian4g00106 421 Pfam Glycosyl hydrolases family 28 79 408 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00106 Vian-Chr4 957212 959272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00106 53 420 Glycoside Hydrolase AT4G18180 41.558 1.92e-98 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00106 K01213 - gmx:106796220 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00106 4 957212 959272 Vian4g00106 4 957212 959272 ECH