Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00098 ATGGGGGCACTCACTTTCACAGAGGAGTTTACTAGCACTGTCCAGCCAGGAAGGTTGTTCAAGGCTTTGATCCTTGATGCTCCAAACCTCATTCCCAAACTGATGCCTGAGGCCATTAAGAATGTTCAATTGGTTGAAGGGAATGGAGGTCCTGGAAGCATTCAGGAGATAACCATTGCTGAAGGTGATAAGATCAAACACTTGAAGCATAGAATTGATGCAATTGACCCTGAGAAATTGACTTACAGCTACGCAGTGATTGAGGGGGATGGTGCACTTGAAAAAGTGGATTCAATTTCACATGAGCTTAAGTTCGAGGCCACTGAAGAGGGAGGTTGCAAGACCAAGAATGTCAGCACTTATCAGCCCAAAGCAGGGGTTGATGTCAAAGAGGAGGATTTCAAGGCTGCAAAGGAAGAAGGCTTGGCTCTCCTCAAGGTAGTGGATGCTTATCTTGTGGCAAACCCAGAGGCCTATGCTTGA 483 0.4638 MGALTFTEEFTSTVQPGRLFKALILDAPNLIPKLMPEAIKNVQLVEGNGGPGSIQEITIAEGDKIKHLKHRIDAIDPEKLTYSYAVIEGDGALEKVDSISHELKFEATEEGGCKTKNVSTYQPKAGVDVKEEDFKAAKEEGLALLKVVDAYLVANPEAYA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00098 160 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Vian4g00098 160 FunFam Major pollen allergen Bet v 1-A 1 159 - -
Vian4g00098 160 CDD Bet_v1-like 5 152 - -
Vian4g00098 160 Gene3D - 2 158 IPR023393 -
Vian4g00098 160 PANTHER - 1 159 - -
Vian4g00098 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00098 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00098 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00098 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00098 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00098 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00098 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00098 160 SUPERFAMILY Bet v1-like 4 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00098 Vian-Chr4 871704 872467 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00098 - - pvu:PHAVU_009G252400g 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00098 4 871704 872467 Vian4g00098 4 871704 872467 ECH