Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00080 ATGGCTTCTCAACACCACACCAAATTACTAGCCATTGCGCTAGTGCTCTGCGTTGCACTGTCCTTCGCAAGGCCAACCCAAGGGAGGGTGCCCTTTGCATGCGACCCTAGGAACGGACTCACGAGGGGGTTCAAGTTCTGCAACACCAACGTCCCCATCCACGTCAGGGTTCAGGACCTCATAGCCAGACTCACATTGCCGGAGAAAATCAGGCTCGTGGTCAACAACGCCATCGCCGTGCCCAGGCTCGGTATCCAAGGCTACGAGTGGTGGTCCGAGGCGCTTCACGGCGTCTCCAATGTGGGCCCCGGCACCAAGTTTGGTGGGGCCTTCCCTGGCGCCACCATGTTCCCCCAAGTCATCACAACCGCTGCTTCCTTCAATCAATCTCTCTGGCGCCAAATCGGACGGGTGGTGTCTGATGAAGCAAGAGCAATGTACAACGGTGGACAGGCTGGTTTGACGTATTGGAGTCCAAATGTCAACATTTTTCGCGACCCACGGTGGGGCCGCGGCCAAGAGACTCCCGGCGAAGACCCAACTCTCGCCGCAAAATACGCCGCCAGCTATGTCCAAGGACTCCAAGGCGACGGCGCCGGAAACCGCCTCAAGGTCGCTGCTTGTTGTAAACACTACACTGCCTATGACCTTGACAACTGGAATGGCGTAGACAGGTTTCATTTCAATGCCAAGGTAAGCAAACAGGATCTGGAGGACACTTACGACGTGCCATTTAAAGCCTGCGTGTTGGAAGGACAAGTGGCGAGTGTGATGTGTTCTTACAATCAGGTGAATGGCAAGCCCACGTGTGCTGACCCTGATCTCCTTCGCAACACTATACGCGGCCAATGGGGGCTCAATGGGTACATAGTCTCGGACTGTGACTCGGTTGGAGTTTTCTATGACAACCAACACTACACAAGAACACCCGAGGAGGCGGCAGCGGAGGCCATAAAAGCGGGCCTGGACTTGGACTGTGGCCCATTCTTGGCGATCCACACCGACGCTGCCATTAGGAAGGGACTCATTTCCGAAAACGATCTTAACCTTGCCTTGGCCAACCTTATCACGGTCCAAATGAGATTGGGCATGTTCGACGGCGAACCCTCGGCCCAACCATACGGAAACTTGGGCCCAAGAGACGTGTGCACCCCGGCCCATCAACAGCTGGCCCTTCAAGCAGCCAGAGAGAGCATAGTATTGTTACAAAACAAAAGAAACTCCTTACCACTATCTCCTGCGCGAATCCGCACCGTAGGAGTCATCGGACCCAATTCGGACGCCACCGTTACAATGATAGGAAACTATGCTGGTGTGGCGTGTGGTTATACCAGTCCTTTGCAAGGGATTGCGAGGTATGTGAAGACTTCACATCAAGTTGGATGCAGGAATGTGGCTTGTAGGGGAAACGAACTGTTCGGAGCAGCAGAGACCGTAGCTAAGCAAGTTGACGCCACTGTGCTGGTAATGGGCCTTGACCAGTCCATAGAAGCAGAAACCAGAGATAGACTTGGGCTTCTCTTACCAGGCCTCCAACAAGAGCTCGTTGCAAGGGTGGCTAGGGCCGCCAGAGGCCCAGTCATCTTGGTTATCATGTCCGGTGGCCCAGTTGATGTCACGTTTGCGGTGAATGACCCAAAGATCAGTGCCATTTTGTGGGTTGGCTATCCTGGTCAAGCTGGGGGAACTGCCATCGCTGACGTCATCTTTGGTCAAACTAACCCAGGAGGAAGATTACCCATGACATGGTACCCGGAAAAGTATTTGACTAAAGTACCCATGACAATCATGGACATGCGTCCAAACTCAGCAACAGGGTACCCAGGAAGAACCTACAGATTCTACAAAGGACCTGTGGTGTTCCCATTCGGACATGGGTTAAGTTACTCGAGATTCAGCCAGAGCTTAGCCATTGCTCCAAAAGAGGTGTCAGTGTCAGTGCCCTTAGCCACTCTCCAAGCCTTGACAAACTCAACCCTTTCAAGCGAAGCAGTGAGGGTGAGCCACGCCAATTGTGATGATACATTGGAGATGGAATTCCACGTGGACGTGAAAAACGAAGGCTCCATGGATGGCACCCACACCCTTCTTGTATTCTCGAAACCACCACCTGGAAAATGGTCTCAGATCAAACAACTAGTGAACTTTCAGAAGACCCATGTTCCTGCTGGGTCGAAGCAGCGTCTGAAGGTTGGTGTTCATGTCTGCAAACATTTGTCCGTCGTGGACCAGTTCGGGATTCGAAGAATCCCATCTGGTGAGCATGAACTCCACATAGGTGATCTCAAACATTCTATTTCTGTCCAAACCGTGCAACAAATCAAGAACTGA 2331 0.5272 MASQHHTKLLAIALVLCVALSFARPTQGRVPFACDPRNGLTRGFKFCNTNVPIHVRVQDLIARLTLPEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPGATMFPQVITTAASFNQSLWRQIGRVVSDEARAMYNGGQAGLTYWSPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVQGLQGDGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVSKQDLEDTYDVPFKACVLEGQVASVMCSYNQVNGKPTCADPDLLRNTIRGQWGLNGYIVSDCDSVGVFYDNQHYTRTPEEAAAEAIKAGLDLDCGPFLAIHTDAAIRKGLISENDLNLALANLITVQMRLGMFDGEPSAQPYGNLGPRDVCTPAHQQLALQAARESIVLLQNKRNSLPLSPARIRTVGVIGPNSDATVTMIGNYAGVACGYTSPLQGIARYVKTSHQVGCRNVACRGNELFGAAETVAKQVDATVLVMGLDQSIEAETRDRLGLLLPGLQQELVARVARAARGPVILVIMSGGPVDVTFAVNDPKISAILWVGYPGQAGGTAIADVIFGQTNPGGRLPMTWYPEKYLTKVPMTIMDMRPNSATGYPGRTYRFYKGPVVFPFGHGLSYSRFSQSLAIAPKEVSVSVPLATLQALTNSTLSSEAVRVSHANCDDTLEMEFHVDVKNEGSMDGTHTLLVFSKPPPGKWSQIKQLVNFQKTHVPAGSKQRLKVGVHVCKHLSVVDQFGIRRIPSGEHELHIGDLKHSISVQTVQQIKN 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00080 776 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 399 632 IPR036881 GO:0004553|GO:0005975
Vian4g00080 776 FunFam probable beta-D-xylosidase 7 56 371 - -
Vian4g00080 776 Gene3D - 56 373 IPR036962 GO:0004553|GO:0005975
Vian4g00080 776 PRINTS Glycosyl hydrolase family 3 signature 279 297 IPR001764 GO:0004553|GO:0005975
Vian4g00080 776 PRINTS Glycosyl hydrolase family 3 signature 205 221 IPR001764 GO:0004553|GO:0005975
Vian4g00080 776 PRINTS Glycosyl hydrolase family 3 signature 117 136 IPR001764 GO:0004553|GO:0005975
Vian4g00080 776 Gene3D - 385 630 IPR036881 GO:0004553|GO:0005975
Vian4g00080 776 PANTHER SUGAR HYDROLASE-RELATED 20 766 IPR044993 GO:0009044|GO:0045493
Vian4g00080 776 FunFam probable beta-D-xylosidase 2 384 630 - -
Vian4g00080 776 SUPERFAMILY (Trans)glycosidases 45 398 IPR017853 -
Vian4g00080 776 Pfam Glycosyl hydrolase family 3 C-terminal domain 399 629 IPR002772 GO:0004553|GO:0005975
Vian4g00080 776 Pfam Glycosyl hydrolase family 3 N terminal domain 111 328 IPR001764 GO:0004553|GO:0005975
Vian4g00080 776 Gene3D Immunoglobulins 655 775 IPR013783 -
Vian4g00080 776 SMART Fn3_like_2 694 763 IPR026891 -
Vian4g00080 776 Pfam Fibronectin type III-like domain 697 761 IPR026891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00080 Vian-Chr4 739351 744961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00080 12 769 Glycoside Hydrolase AT5G49360 71.859 0.0 1134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00080 - - gmx:100812823 1417.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00080 4 739351 744961 Vian4g00080 4 739351 744961 ECH