Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00079 ATGCAACATCTCTATATAGTATCTCTAAAACCAAACGAACACGCCACACAACAAAAGCATTGTTCAAGGCAAAAGAAAGAGAGAAAGATGAGCCCAACATGGGTTTTTGTGGTGTGTGTTGCAGCCATGTTGGTGGTTGGGAATGGACAATCATCGGTGAAGCCATTGGTGAAGACAGTGAGGGGGAAGAAGGTGTGTGACAAAGGCTGGGAGTGCAAGGGTTGGTCTGCTTATTGCTGCAACGATACTATATCTGACTATTTCCAGACTTACCAGTTTGAGAACCTCTTTGCAAAGCGCAATTCGCCGGTGGCACATGCCGTTGGATTCTGGGACTACCGTTCTTTTATCACTGCTGCAGCACAGTATCAGCCTCTCGGATTTGGCACCACCGGAGGAACCACCAGTGGCCAGACGGAGGTTGCCGCTTTCCTTGGCCATGTTGGCAGCAAAACCTCTTGTGGTTATGGGGTGGCTACCGGGGGACCCTTAGCCTGGGGTTTATGCTACAACAAGGAATTGAGTCCTGATAAATTCTACTGCGACGAATACTACAAATTGACATATCCCTGCTCTCCTGGTGCAGCATACTATGGTCGTGGTGCCATCCCACTTTACTGGAACTACAACTATGGAAAAGCTGGGGAAGCCTTGAAGGTGGATCTATTGAACCATCCAGAATACATAGAACAAAATGCAACCCTAGCCTTTCAGGCTGCACTGTGGCAGTGGATGAGCCCACCTGAGAAGCACCTACCTTCACCCCATGATGTGTTTGTGGGCAATTGGAAACCCACCAAGAACGACACATTGTCCAAAAGGGTACCTGGATTTGGTGCCACTATAAATTTGCTCTATGGGGACCAAACTTGTGGGCAGGGACCTGATAATGAGGCCATGAACAACATCATTTCTCACTATCTTTATTACCTTGATCTCATGGGTGTTGGCAGAGAAGAAGCTGGGCCTAATGAAGTTCTCTCCTGTGCTGAACAAAAGGCTTTTAAGCCCTCTGGTTCACCATCTTCTGCCACAAATTGA 1041 0.4784 MQHLYIVSLKPNEHATQQKHCSRQKKERKMSPTWVFVVCVAAMLVVGNGQSSVKPLVKTVRGKKVCDKGWECKGWSAYCCNDTISDYFQTYQFENLFAKRNSPVAHAVGFWDYRSFITAAAQYQPLGFGTTGGTTSGQTEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKELSPDKFYCDEYYKLTYPCSPGAAYYGRGAIPLYWNYNYGKAGEALKVDLLNHPEYIEQNATLAFQAALWQWMSPPEKHLPSPHDVFVGNWKPTKNDTLSKRVPGFGATINLLYGDQTCGQGPDNEAMNNIISHYLYYLDLMGVGREEAGPNEVLSCAEQKAFKPSGSPSSATN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00079 346 PANTHER CHITINASE-RELATED 36 333 - -
Vian4g00079 346 PIRSF Endochitinase 22 336 IPR016283 GO:0004568|GO:0005975
Vian4g00079 346 Gene3D - 92 335 - -
Vian4g00079 346 CDD chitinase_GH19 92 329 - -
Vian4g00079 346 FunFam Endochitinase (Chitinase) 171 231 - -
Vian4g00079 346 Gene3D Endochitinase, domain 2 172 231 - -
Vian4g00079 346 Pfam Chitinase class I 92 319 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vian4g00079 346 SUPERFAMILY Lysozyme-like 84 335 IPR023346 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00079 Vian-Chr4 724465 725815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00079 51 335 Glycoside Hydrolase AT3G16920 80.351 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00079 - - vra:106760177 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00079 4 724465 725815 Vian4g00079 4 724465 725815 ECH