Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02574 ATGGAGAATCCGAATACAAATGTTGAAATGTATGGGAAGTTTACATGGACCATTACGAACTTCTCCACTTTAGACTCCGAGGAATTGTACTCGGATGCGTTTTCTCTTGATGGCCACATATGGAGGATTCTTATCATTCAAAAAGGGGATTTGTCAATTTTTTTGGATGCTGGTGTTGCTACCATGCCTCATGGATGGGAAAAATTTGCAAATTTCAGAGTCATTCTAATTAATCAGCTCAATCACAAAAGAAATATAATAAAAGATTGCAGCCACACCTTCAACTCAAAGCAGGGCAAGTGGGGTTTTCCATCTTCCATATCTTTGGGTGAACTTTGGCACTCTAGTCGCGGGTTCATTGTAAATGATACTTGTGTAATTGAAGCTCATATATTGGTTCATATGTTAGAGCATAAGAAACTAGTTGCTGAATCGGTGAGGAACATCGACAATAAGCTTGTTGAAAGCATTGAGAATATCTCCCCCAAGGAAATCATTTCAACCTCATCATTTGGTGAGGTGGTGGATTTTAGGGACATAGGAAAAGTAGAGAAAGATTTTATTCCTCTATTGGAAGAAGTTTGTTCACAATATCCCTTACTTATGGATATTAAGAAGAAGAGAAGTCAAAGATTTACTGACTGGGCTTTTACCGCACTTGGTAGAGTTCTTCATTTTCTCAACTTAAAAAAGTGA 696 0.3764 MENPNTNVEMYGKFTWTITNFSTLDSEELYSDAFSLDGHIWRILIIQKGDLSIFLDAGVATMPHGWEKFANFRVILINQLNHKRNIIKDCSHTFNSKQGKWGFPSSISLGELWHSSRGFIVNDTCVIEAHILVHMLEHKKLVAESVRNIDNKLVESIENISPKEIISTSSFGEVVDFRDIGKVEKDFIPLLEEVCSQYPLLMDIKKKRSQRFTDWAFTALGRVLHFLNLKK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02574 231 CDD MATH 12 131 IPR002083 GO:0005515
Vian3g02574 231 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 13 168 - -
Vian3g02574 231 SMART math_3 13 112 IPR002083 GO:0005515
Vian3g02574 231 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 8 146 IPR008974 GO:0005515
Vian3g02574 231 ProSiteProfiles MATH/TRAF domain profile. 11 131 IPR002083 GO:0005515
Vian3g02574 231 SUPERFAMILY TRAF domain-like 12 133 - -
Vian3g02574 231 Pfam MATH domain 18 132 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02574 Vian-Chr3 40012626 40013754 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02574 - - var:108324404 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02574 3 40012626 40013754 Vian3g02574 3 40012626 40013754 ECH
Vian3g02574 3 40012626 40013754 Vian7g01427 7 22809103 22821045 ECH