Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02167 ATGCGGTGTTGCATTCCTACGCTGTTGGCGGTGATCGCCGTGCTGGTGTCGGCGGTGCACGGCGCTTTCCTACCTCTCGAGAGGAGCATTCCTCTCAGCCACCGCGCTGAGGTGGCGGAGCTGAGGGCTCTTGACAGAGCCCGCCACGCCCGAATGTTGAGCGGAATAGTCGACTTAGCAGTCCAAGGAACATCCGATCCAAACACCGCTGGGTACGGGTTGTATTATACCAAAGTGAAGATGGGAACACCTCCTAAAGAATTTAACGTTCAGATTGATACGGGGAGTGATATATTATGGGTGAATTGCAATACTTGCAGTAATTGTCCCCAGTCTAGTGAACTAGGGGTGAGGATTGTGAATTTGGTTTTGATTTTGGTGCTTAATATTGAGCTTAATTTCTTTGACACGGTTGGGTCGTCCACCGCTGCGTTGGTGTCCTGCACGGACCCGATATGCACTACCGGGGTTCAAGGTGCTTCTGCTGAGTGCTCCACGAGGGCTAATCAATGCAGCTACGCCTTTAAGTATGGAGATGGAAGTGGGACTGCAGGTTATTATGTTTCGGATGCATTGTATTTTAACTTGATCGTGGGTCAGCCTCCACTTCCACCGGTTAACTCTTCGGCTACCATTGTTTTTGGGTGTAGCATCTATCAGTCTGGAGATCTGACTAAGACAGAAAAAGCAGTTGATGGAATTTTTGGGTTTGGTCCAGGTGCTCTATCTGTTGTATCGCAGTTGTCATCACGCGGAATAACACCCAAAGTCTTCTCTCATTGCTTGAAAGGAGATGGTGATGGAGGAGGCATTCTAGTTCTTGGCGAAATAAAGGAGTCAAGTATTGTTTATAGTCCACTTGTTCCATCACAGCCTCATTACAACTTGAATCTTCAGAGTATTGCTGTCAATGGGCAACTCCTTCCAATTAATCCAGCTGTATTTGCAACGTCTAATGACCGAGGAACTATAGTTGACTGTGGTACAACGTTGGCATATCTTGTTCAAGAAGCTTATGATCCTCTAGTCACTGCTATAACTACCGCCGTGTCACAATCTGCTCAGCAAACTAATTCCAAAGGAAGTCAGTGTTATCTGGTCACAACCAGTATAGGTGACATTTTCCCTTCAGTCAGTTTAAATTTTGAGGGTGGAGCTTCAATGATTTTAAAACCAGAGCAGTACCTTATGCATAATGGTTACCGTGATGGTGCTGAAATGTGGTGCATCGGTTTCCAGAACGTACAGGAGGGAGTTTCAATTTTAGGAGATCTTGTCCTAAAAGATAAGATAGTTGTGTATGACTTGGCACATCAACGAATTGGATGGGCTAACTATGACTGTTCTTTGTCTGTAAATGTTTCTGTGACTACGAGCAAGGATGAATACATCAATGGGGGACAGCTAAGTGTCAGCAGCTCCGCAATAAGCGTTCTTTCTAATTTACTATCCGTAAGCATTGTGGCTCTGTCTTTGTACATAATAATCTTGAAAAGTGAAGATTTTAATGAGGGTTTCAGAAGGGAAAATTCTGGCAGGAGTTTGATTAGTGGAAATTTGGATGGAAGTTCCAAGAATGATTAG 1584 0.4482 MRCCIPTLLAVIAVLVSAVHGAFLPLERSIPLSHRAEVAELRALDRARHARMLSGIVDLAVQGTSDPNTAGYGLYYTKVKMGTPPKEFNVQIDTGSDILWVNCNTCSNCPQSSELGVRIVNLVLILVLNIELNFFDTVGSSTAALVSCTDPICTTGVQGASAECSTRANQCSYAFKYGDGSGTAGYYVSDALYFNLIVGQPPLPPVNSSATIVFGCSIYQSGDLTKTEKAVDGIFGFGPGALSVVSQLSSRGITPKVFSHCLKGDGDGGGILVLGEIKESSIVYSPLVPSQPHYNLNLQSIAVNGQLLPINPAVFATSNDRGTIVDCGTTLAYLVQEAYDPLVTAITTAVSQSAQQTNSKGSQCYLVTTSIGDIFPSVSLNFEGGASMILKPEQYLMHNGYRDGAEMWCIGFQNVQEGVSILGDLVLKDKIVVYDLAHQRIGWANYDCSLSVNVSVTTSKDEYINGGQLSVSSSAISVLSNLLSVSIVALSLYIIILKSEDFNEGFRRENSGRSLISGNLDGSSKND 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02167 527 Pfam Xylanase inhibitor N-terminal 75 275 IPR032861 -
Vian3g02167 527 PANTHER ASPARTYL PROTEASES 10 442 IPR001461 GO:0004190|GO:0006508
Vian3g02167 527 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190|GO:0006508
Vian3g02167 527 PRINTS Pepsin (A1) aspartic protease family signature 323 334 IPR001461 GO:0004190|GO:0006508
Vian3g02167 527 PRINTS Pepsin (A1) aspartic protease family signature 420 435 IPR001461 GO:0004190|GO:0006508
Vian3g02167 527 ProSiteProfiles Peptidase family A1 domain profile. 75 444 IPR033121 -
Vian3g02167 527 Gene3D Acid Proteases 58 276 IPR021109 -
Vian3g02167 527 Gene3D Acid Proteases 277 455 IPR021109 -
Vian3g02167 527 SUPERFAMILY Acid proteases 70 451 IPR021109 -
Vian3g02167 527 Pfam Xylanase inhibitor C-terminal 293 444 IPR032799 -
Vian3g02167 527 FunFam Aspartic proteinase-like protein 2 277 455 - -
Vian3g02167 527 CDD pepsin_A_like_plant 75 448 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02167 Vian-Chr3 31363400 31368052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02167 68 449 Miscellaneous Gene Families AT1G44130 26.355 1.83e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02167 - - gmx:100820394 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02167 3 31363400 31368052 Vian3g02167 3 31363400 31368052 ECH
Vian2g02425 2 44730682 44736514 Vian3g02167 3 31363400 31368052 PCT