Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01948 ATGCGGCCCAAACTAGCCTACTCCTTCCCTGAGGAGGTGCTGGAGCACGTGTTCTCCTTTATCGAGTGCGATAAGGACCGTGGCTCGATCTCCCTCGTCTGCAAGTCCTGGTATGAGATCGAGCGTTGGTGCCGCCGGAGAGTCTTCGTCGGAAACTGCTACGCTGTCTCTCCGGCCACCGTTGTCAACCGCTTCCCCAAAGTGAGATCCATCACCATCAAGGGCAAGCCGCACTTCGCGGACTTCAATTTGGTCCCCGAGGGTTGGGGCGCTTACGTCGGCCCTTGGATCAAGGCCATGGCGGCTGCCTACCCCTGGCTCCAGGAGATCAGGCTTAAGAGGATGGTCGTCACCGACGAATGCTTGGAACTTATCGCCAAATCGTTCAAGAACTTCGGAGTGCTGGTGCTCACTTCTTGCGAGGGTTTCACCACTGATGGGCTTGCTGCCATTGCCGCCCATTGCAGGAATTTGAGGGAGTTGGAGTTGCGGGAGAGTGAAGTGGAAGACATTTGTGGACACTGGCTTAGCCATTTTCCCGATTCGTACACATCCTTGGTTTCCCTTAATATTTCTTGCTTAGGCAATGAGGTGAATTTGTCTGCCCTAGAGCGTCTGGTTAGTAGGTGTCCCAATCTGCAGACTCTCCGCCTCAACCGTGCTGTGCCCCTAGATAAGCTGGCCAACCTTCTTCGCGGAGCTCCTCAGTTAGTTGAGTTAGGCACAGGAGCCTACACGAGTGAGATGCGGCCGGAGGTCTTTTCAAACCTGGCTGAAGCATTTGCTGGGTGCAGGCAATTAAAAAGCTTGTCAGGATTTTGGGACGTGCTACCCTCCTACCTTCCAGCTGTTTATCCTATCTGCTCCAACCTGACATCACTAAACATGAGTTATGCAACTATTCAAAGCCCTGATCTTATCAAGCTTGTTAGTCAGTGTGAAAATTTACAACGGTTATGGGTGTTGGATTACATTGAAGATGCTGGCCTTGAAGTGATTGCTGCATCGTGTAAGGATCTGAGGGAGTTGAGGGTGTTTCCGTCTGATCCATTTGGGTTAGAACCAAATGTGGCATTGACTGAGCAGGGCCTTGTTTCTGTGTCTGAAGGCTGCTCCAAGCTCCAGTCCGTTCTATATTTTTGTCGTCAAATGTCTAATGTGGCCTTGCTTACAATTGCCAGGAACAGGCCTAATATGACTCGTTTTAGACTGTGTATTATTGAGCCGCAAGTTCCAGACTATCTTACCCAAGATCCTCTGGATGCTGGTTTTGGAGCTATTGTAGAGCATTGCAAGGATCTTCGTCGCCTTTCCCTTTCCGGGCTTCTCACTGACCGCGTTTTTGAGTATATTGGGACTTACGGTAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCCGGAGATAGCGATTTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCCCTTTTAGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTTGGTGAGTTATGGAGCATGTAAACTTCTGGGTCAGAAAATGCCGATGCTTAATGTTGAAGTGATTGATGAAAGAGGACCTCCAGATTCAAGGCCGGATAGTAGTCCTGTTGAGAAGCTATACATATACAGGACTGTTTCTGGGCCAAGATTGGACATGCCAGGCTATGTATGGAGAATGGAAGGCGATTCTGCATTAAGAATTTCTTGA 1758 0.4989 MRPKLAYSFPEEVLEHVFSFIECDKDRGSISLVCKSWYEIERWCRRRVFVGNCYAVSPATVVNRFPKVRSITIKGKPHFADFNLVPEGWGAYVGPWIKAMAAAYPWLQEIRLKRMVVTDECLELIAKSFKNFGVLVLTSCEGFTTDGLAAIAAHCRNLRELELRESEVEDICGHWLSHFPDSYTSLVSLNISCLGNEVNLSALERLVSRCPNLQTLRLNRAVPLDKLANLLRGAPQLVELGTGAYTSEMRPEVFSNLAEAFAGCRQLKSLSGFWDVLPSYLPAVYPICSNLTSLNMSYATIQSPDLIKLVSQCENLQRLWVLDYIEDAGLEVIAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCSKLQSVLYFCRQMSNVALLTIARNRPNMTRFRLCIIEPQVPDYLTQDPLDAGFGAIVEHCKDLRRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYGACKLLGQKMPMLNVEVIDERGPPDSRPDSSPVEKLYIYRTVSGPRLDMPGYVWRMEGDSALRIS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01948 585 FunFam Transport inhibitor response 1 46 576 - -
Vian3g01948 585 Gene3D - 1 45 - -
Vian3g01948 585 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 87 536 - -
Vian3g01948 585 SMART LRR_CC_2 431 454 IPR006553 -
Vian3g01948 585 SMART LRR_CC_2 480 504 IPR006553 -
Vian3g01948 585 SMART LRR_CC_2 371 395 IPR006553 -
Vian3g01948 585 SUPERFAMILY RNI-like 84 517 - -
Vian3g01948 585 Gene3D Ribonuclease Inhibitor 46 576 IPR032675 -
Vian3g01948 585 Pfam Transport inhibitor response 1 protein domain 66 112 IPR041101 -
Vian3g01948 585 Pfam F-box 7 47 IPR041567 -
Vian3g01948 585 CDD F-box_AtTIR1-like 8 45 - -
Vian3g01948 585 FunFam Transport inhibitor response 1 5 45 - -
Vian3g01948 585 SUPERFAMILY F-box domain 4 43 IPR036047 GO:0005515
Vian3g01948 585 SMART fbox_2 9 50 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01948 Vian-Chr3 23190752 23193061 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01948 K14485 - gmx:100809794 1112.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01948 3 23190752 23193061 Vian3g01948 3 23190752 23193061 ECH
Vian2g02924 2 49938382 49941540 Vian3g01948 3 23190752 23193061 PCT