Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01737 ATGAAGTGTCTACGGTCAGGAGATTCGTTGGGAGGAGCTGATGAAGTGTTTCCTTCTTCTGGATCTCTTGCAAGTGCAACCAAGGACTTTTCAGCTAGTGAACACTCTTGCTTAGGCGAACACATTGATAAGAAGCCGGACACTGGGAACATAGAAGAAGCTGAATCATCCTTACGTGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTCTGCTAGGAAGATATGAATATCAGAAAGGAAATATAGTAGCTGCTTTACATGTCTTTGAGGGAATAGACATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAGCAGAGAACGCCGCAAGAAACATTCTCAAAATCATACTGAACCGCAAATGTCTATACATTCTGTTGGCTTATTGTTGGAATCTGTCTTCCTCAAAGCAAAATCTTTGCAGATTCTTGAAAGGTTTAAAGAGGCTGCCCAATCTTGCAAAGTTATTTTGGATATAGTGGAATCTTCATTACCCGAAGGCTTGCCTGATAACTTCGGTGCTGAATGTAAATTACAGGAGACCCTGAACAAGGCAGTTGAGCTGCTTCCAGAATTATGGAAACTTGCTGATTGTCCACGTGAAGCTATTTTGTCTTACCGACGAGCTCTTCTTCATCAATGGAATCTTGATGCAGAGACTATAGCAAAAATTCAGAAAGAATTTGTTGTTTTTCTTCTTTACAGTGGAGGAGAAGCCACACCGCCCAATCTCCGTTCCCAAATGGATGGCTCATTTGTACCTAGAAATAACATAGAAGAGGCTATACTTATCTTAATGATTTTGTTAAGAAAAGTCACTCTAAATAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTCTCATTTGCTCTTTCAGTTTCTGGAGATTTGACGGCTTTAGCCAATCAATTGGAAGAATTGCTTCCACGGACAATTACTAGAAGTGAAAGGTACTACACTCTAGCTCTTTGTTATTATGGAGCAGGTAGGGATCTGATAGCACTGGATTTTCTCAGAAAGTTGTTGAGGTGTAGAGAGGACCAAGACCATGTTCCTGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAACTGTTCTCTTGCAGAAGAAGGAGTAAGCTTTGCCAAGCGAGTGCTTCAGAACTTGGATGGCAGATGTAATCAGCAAGAAGATCATGCTAATTTCTTTCTTGGTGTCTCACTTTCAGCCCAGTCGAAACTGGCTATTTCTGATTCTGAAAGGTTTAAGAGACAATCTGAGGCACTTCATGCCCTAGAAACTGCTGCCAGAACAAGAAACCCCCTTGTACTATACCATCTCAGTCTAGAATATGCAGAACAAAGGAAGTTGGATGCTGCACTTCATTATGCAAAATGCTGCATAAAACTGGAAGGTAGTTCTAACATTAAAGGATGGTTGTTGTTAGCCCGGATATTGTCTGCTCAAAAACAGTTTCTGGATGCCGAATCTATCATCGATTCTGCTTTGGATCAAACTGGAAAATGGGATCAGGGTGATTTGTTGCGAACGAAAGCTAAACTTCAAATTGCACAGGGCAAGTTAAGGAATGCCATTGAGACATATACTCAGCTTCTTGCTGTTCTTCAAATTCAGAGTAAAGGTTTTGGTTCTGGAAAGAAGCTATATAAGGACAATAGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATATTACTTATGTATATATCAGTCTTTTACAGTGGCATGATGCAGAGGTGTGTCTTTCAAAATCCAAGGCCATCAAACCACTCTCTGCATCTAGATGTCATGCAATAGGCGTAATGTACGAAGCAAAGGGCCATTACAAAGAGGCTCTAAAATCTTATGGCAATGCTTTGGACATTGATCCTGGCCATGTCCTTAGCTTAGTCTCCAGTGCTGTAGTTCTTAAACGATGTAGTAGTCACTCAAATCCAACAGTTAAAAGCTTTTTGATGGAAGCACTACGACACGACAGATTCAATGCTTCTGCTTGGTATAATCTTGCCCTTCTTCACAAAGCTGAGGGCACAGCATCATCATTAGTTGAAGCTGCAGAATGTTTTCAAGCTGCACATTTTCTTGAAGAATCTGAACCTGTTGAACCTTTCAGATGA 2136 0.4087 MKCLRSGDSLGGADEVFPSSGSLASATKDFSASEHSCLGEHIDKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSRSRERRKKHSQNHTEPQMSIHSVGLLLESVFLKAKSLQILERFKEAAQSCKVILDIVESSLPEGLPDNFGAECKLQETLNKAVELLPELWKLADCPREAILSYRRALLHQWNLDAETIAKIQKEFVVFLLYSGGEATPPNLRSQMDGSFVPRNNIEEAILILMILLRKVTLNRIEWDPSILDHLSFALSVSGDLTALANQLEELLPRTITRSERYYTLALCYYGAGRDLIALDFLRKLLRCREDQDHVPGLLMASKICCENCSLAEEGVSFAKRVLQNLDGRCNQQEDHANFFLGVSLSAQSKLAISDSERFKRQSEALHALETAARTRNPLVLYHLSLEYAEQRKLDAALHYAKCCIKLEGSSNIKGWLLLARILSAQKQFLDAESIIDSALDQTGKWDQGDLLRTKAKLQIAQGKLRNAIETYTQLLAVLQIQSKGFGSGKKLYKDNRDRARNLEVEIWHDITYVYISLLQWHDAEVCLSKSKAIKPLSASRCHAIGVMYEAKGHYKEALKSYGNALDIDPGHVLSLVSSAVVLKRCSSHSNPTVKSFLMEALRHDRFNASAWYNLALLHKAEGTASSLVEAAECFQAAHFLEESEPVEPFR 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01737 711 Gene3D Tetratricopeptide repeat domain 416 505 IPR011990 GO:0005515
Vian3g01737 711 Gene3D Tetratricopeptide repeat domain 506 706 IPR011990 GO:0005515
Vian3g01737 711 PANTHER PROTEIN NPG1 1 711 IPR043376 -
Vian3g01737 711 Pfam Tetratricopeptide repeat 602 632 IPR013105 -
Vian3g01737 711 ProSiteProfiles TPR repeat profile. 599 632 IPR019734 GO:0005515
Vian3g01737 711 SMART tpr_5 473 506 IPR019734 GO:0005515
Vian3g01737 711 SMART tpr_5 565 598 IPR019734 GO:0005515
Vian3g01737 711 SMART tpr_5 134 167 IPR019734 GO:0005515
Vian3g01737 711 SMART tpr_5 319 352 IPR019734 GO:0005515
Vian3g01737 711 SMART tpr_5 669 705 IPR019734 GO:0005515
Vian3g01737 711 SMART tpr_5 438 471 IPR019734 GO:0005515
Vian3g01737 711 SMART tpr_5 509 542 IPR019734 GO:0005515
Vian3g01737 711 SMART tpr_5 599 632 IPR019734 GO:0005515
Vian3g01737 711 Gene3D Tetratricopeptide repeat domain 48 385 IPR011990 GO:0005515
Vian3g01737 711 SUPERFAMILY TPR-like 510 683 IPR011990 GO:0005515
Vian3g01737 711 SUPERFAMILY HCP-like 420 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01737 Vian-Chr3 19668406 19673088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01737 1 711 Calmodulin-binding Proteins AT4G28600 57.815 0.0 777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01737 3 19668406 19673088 Vian2g02226 2 42359418 42362906 PCT