Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02226 ATGGGGAGTAGGGTTAAGCAGGGGAGGAGATTGCGGAAGATGATGAAGTGTCTGTGTGTGAGGGAGCCGGTGAAAGGTGAGGATGAAAGGGTTCCTTCCTCGGAATCTCTTGGAATCAGGGAATTTTATTCATCAACGGCGAGTGGGCGTTCTGGCCTCGATGGAGAAATTGAGATGTTGGGGTCTGATTCTAGTAAAATAGACGAAACTGAATTGTCTTTGCGTGAGAGTGGCATCTTGGACAATGAGGAAGCTAGTGCTCTGTTAGGAAGAGATGAATATCATAAAGGGAATATAAAAGCTGCTTTACGTGTTTATGAGAAAATAAATATAGGCGCTGTGACTTCCAAGATGAAAATTTCCCTTGCCAAAAGCAGAGAACGAAAGCACTCCCATTATTATGCTACTCCCCCAATGTCCATGTACACGGCTGGATTACTGTTGGAAGCAATTTTCCTAAAATCGAAATGCTTACAGGCTCTAGGGAGGTTTAAAGAAGCTGCCCAAACTTGTATAGTTATTCTGGACACATTTGAATCTTCATTCCCTGAAGGCTTGCCTCAAAACTTCGGCAACGAGGATAAATTGCAGGAGACTTTGAGTAAGGTAGTTGAGCTACTTCCAGATTTGTGGAAACTTGCTGATTCTCCCCGTGATGTTATTTTGTCTTACCGGCGTGCACTCCTACACAAATGGAATCTTGATGCAAAAACCATAGCAAGGATTCAGAAAGAATTTGTTGTTTTTCTTCTGTATAGTGGAGGGGAAGCAATCCCCTCCAATCTTCGTTCCCATATGGACAACTCTTTTGTACCTAGAAATAACTTAGAGGAGGCTATACTCCTTCTAATGATTTTGCTAAGAAAAATTACTCTAAATAAACTTGAGTGGGATCCATCAATTTTGGATCACCTTGCATTTGCCCTATCTGTTTCAGGGGACTTGACAGCTTTAGCCAATCAATGGGAAGAATTACTCCCTGGGACTGTCAATCGTAGAGAAAGATACCAGGCCTTATCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCATTGAATCTTCTTAGAAAATTGTTGAGTAAAGAGGACCCAAAACATGTTCCCTCTTTGTTAATTGCTTCTAAGATTTGTTGTGAGAACCCTGATCTTGCAAAAGATGGGGCAACCTTAGCTCGCAAGGTGCTTGAGAACTTGGATGGGAAATGTAATCAGTTGGAAGGTCTTTCTAGTTGCTTACTTGGTGTTTCACTTTCAACACACTCAAAATTTTGTATTTCTAATTCTGAGAGGGTTGAGAGACAATCCGAGGCACTACATTCTCTGGAAACTGCACACAAAGTGACTGGAATGAGTAACCCCCTTGTAATATACAGTTTGAGTTTAGAATATGCAGAGCAAAGGAAGTTGGATGCGGCACTTCATTATTCAAGATGCTTTCTAAACTTGGAAGCTGGGTCTAGTGTTAAAGGGTGGTTATTGTTAGCCCGAATATTATCAGCTCAAAAACAGTTCTTAGATGCTGAATCTATCCTCAATGAGGCCTTGGATCAGACTGGAATATGGGATCAAGGAGAGTTACTACGAACAAAAGCTAAACTACAAATAGTGCAGGGCCAGTTAAAAACTGCCATTGAAACATATACTCACCTTCTTGCTATTCTCCTAGTTCAGAGAAAGACGTTTGGTTCAAGGAAGACGCTATATAAGGACTACATAGATCATGCTAGGAACATGGAAATAGAAATATGGCATGATCTTGCGTATGTTTACATAAGTCTGTCACGATGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAATAGGTAGTATGTACGAAGCAAAGGGGGTTCACGAAGAGGCTTTAAGAGCTTTTCGTGATGCTTTGAATATAGATCCCGGACATGTCCCTAGCTTGATCTCTACTGCGGTGGTCCTTAGGCAGTGCAGTAATCGGTCAAATCCTGCTATCAGAAGCTTTCTGATGGATGCACTACGGCATGACAGATATAACGCTTCTGCATGGTATAATCTTGGCATTTTCCACAAGGACGAGGGTACAATGCTAGAAGCTGCAGAATGTTTTGAGACAGCCAACTTTCTTGAAGAATCGGCTCCAGTTGAACCTTTCAGATGA 2175 0.4175 MGSRVKQGRRLRKMMKCLCVREPVKGEDERVPSSESLGIREFYSSTASGRSGLDGEIEMLGSDSSKIDETELSLRESGILDNEEASALLGRDEYHKGNIKAALRVYEKINIGAVTSKMKISLAKSRERKHSHYYATPPMSMYTAGLLLEAIFLKSKCLQALGRFKEAAQTCIVILDTFESSFPEGLPQNFGNEDKLQETLSKVVELLPDLWKLADSPRDVILSYRRALLHKWNLDAKTIARIQKEFVVFLLYSGGEAIPSNLRSHMDNSFVPRNNLEEAILLLMILLRKITLNKLEWDPSILDHLAFALSVSGDLTALANQWEELLPGTVNRRERYQALSLCYYGAGKDLVALNLLRKLLSKEDPKHVPSLLIASKICCENPDLAKDGATLARKVLENLDGKCNQLEGLSSCLLGVSLSTHSKFCISNSERVERQSEALHSLETAHKVTGMSNPLVIYSLSLEYAEQRKLDAALHYSRCFLNLEAGSSVKGWLLLARILSAQKQFLDAESILNEALDQTGIWDQGELLRTKAKLQIVQGQLKTAIETYTHLLAILLVQRKTFGSRKTLYKDYIDHARNMEIEIWHDLAYVYISLSRWHDAEVCLSKSKAIKLYSASRCHAIGSMYEAKGVHEEALRAFRDALNIDPGHVPSLISTAVVLRQCSNRSNPAIRSFLMDALRHDRYNASAWYNLGIFHKDEGTMLEAAECFETANFLEESAPVEPFR 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02226 724 ProSiteProfiles TPR repeat profile. 685 718 IPR019734 GO:0005515
Vian2g02226 724 ProSiteProfiles TPR repeat profile. 615 648 IPR019734 GO:0005515
Vian2g02226 724 SMART tpr_5 581 614 IPR019734 GO:0005515
Vian2g02226 724 SMART tpr_5 685 718 IPR019734 GO:0005515
Vian2g02226 724 SMART tpr_5 489 522 IPR019734 GO:0005515
Vian2g02226 724 SMART tpr_5 615 648 IPR019734 GO:0005515
Vian2g02226 724 SUPERFAMILY TPR-like 526 711 IPR011990 GO:0005515
Vian2g02226 724 Gene3D Tetratricopeptide repeat domain 66 580 IPR011990 GO:0005515
Vian2g02226 724 Pfam Tetratricopeptide repeat 616 647 IPR019734 GO:0005515
Vian2g02226 724 SUPERFAMILY TPR-like 434 554 IPR011990 GO:0005515
Vian2g02226 724 Gene3D Tetratricopeptide repeat domain 605 712 IPR011990 GO:0005515
Vian2g02226 724 PANTHER PROTEIN NPG1 15 724 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02226 Vian-Chr2 42359418 42362906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02226 9 724 Calmodulin-binding Proteins AT4G28600 53.659 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02226 K21843 - gmx:100784353 1221.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02226 2 42359418 42362906 Vian2g02226 2 42359418 42362906 ECH
Vian3g01737 3 19668406 19673088 Vian2g02226 2 42359418 42362906 PCT