Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01581 ATGAATCACGGTCGGCTGATTTCTGGTGGAGGATGGCTAATCAGGCGACTTTTCACGGCGGCTGAGAGTCCATCAAAAAGTCCAGACCTCTATCGAATGTTATCGGCGTTGGGCAAGACTGGAGGAAGCGTGTCGGAAACTTTGGACAACCATATAATGAAAGGCAAAGCCGTAAAAACAGAAGAACTCCTAAGATATGTCCAGGAGCTCCGAAGGTATCGCAGATTTCAGCATGCACTCGAGCAATTTGATGAGTCTGTATATGAGAAGTGCTGCGCCTCTTTGGGCGATCTTGATGGGGTGGAGAGAGTCTATGAGGAGATGAAAACTAAAGATCGAATTGGTTGGGAGACTTACAGCAACCTTGCTGCTATTTCTGTGAAGGTTAAGGACTTTGAGAAGGCTGAAATGATGCTTAAGGAGCTGGAGAAACGAGTGAAGCCACGGCAGCGTGATGCTTACCATTGCTTGCTTAGCCTCTATGCCGGGACTGGTAATCTTGGAGAGGTTCACAGAGTGTGGAATTCCCTCAAGTCTGTCTCCCCTGTGACCAATTTGAGCTATCTGGCTATGCTTAGTAACCTCCGAAGGCTTAATGATATAGAGGGCTTAACAAAATGTTTTAAGGAGTGGGAAGCTAGTTGTGTTAGCTATGATGTGAGGTTAGCTGGTGTCTGCGTTAGTGCTTATTTGGGTCAGAACATGGTGGAAGAAGCTGCATTGGTGTTTGAGGGGGCTAGCAGGAGGAGCAAAAGCCCTTTGTTCAGGATTGAGGAAATGTTCATATTGTATTTCTTGGAGAAACGTCAATTGGATGCTGCTGTGAGGCACTTGGAGGCTGCGCTTTCAGAAGTCAAGGGTGATGAATGGCATCCTTCACCACAAGTTGTTGGGGCTTTTCTGAAGTACTACGAAGAAGACACGGGTATGGATGGTGTTGACGAGTTGTGTAAGATTCTCAAGGCTAAGAATTTTGATGATTCCTGGATTAAAACTTGCATTAATGAGGCCAAAGCGTCTCCTGAAACTGATCCAAGATTGAAGGAAGATGATCCTCCAAACTATCGTGCGCAGGAGAACTAG 1083 0.4617 MNHGRLISGGGWLIRRLFTAAESPSKSPDLYRMLSALGKTGGSVSETLDNHIMKGKAVKTEELLRYVQELRRYRRFQHALEQFDESVYEKCCASLGDLDGVERVYEEMKTKDRIGWETYSNLAAISVKVKDFEKAEMMLKELEKRVKPRQRDAYHCLLSLYAGTGNLGEVHRVWNSLKSVSPVTNLSYLAMLSNLRRLNDIEGLTKCFKEWEASCVSYDVRLAGVCVSAYLGQNMVEEAALVFEGASRRSKSPLFRIEEMFILYFLEKRQLDAAVRHLEAALSEVKGDEWHPSPQVVGAFLKYYEEDTGMDGVDELCKILKAKNFDDSWIKTCINEAKASPETDPRLKEDDPPNYRAQEN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01581 360 MobiDBLite consensus disorder prediction 341 360 - -
Vian3g01581 360 SUPERFAMILY TPR-like 91 182 IPR011990 GO:0005515
Vian3g01581 360 MobiDBLite consensus disorder prediction 340 360 - -
Vian3g01581 360 PANTHER OS12G0527900 PROTEIN 26 81 - -
Vian3g01581 360 Pfam PPR repeat 91 111 IPR002885 -
Vian3g01581 360 Gene3D Tetratricopeptide repeat domain 33 207 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01581 Vian-Chr3 17387239 17388736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01581 80 321 EF-hand Containing Proteins AT1G02150 32.653 5.87e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01581 - - gmx:100781679 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01581 3 17387239 17388736 Vian3g01581 3 17387239 17388736 ECH
Vian3g01581 3 17387239 17388736 Vian2g02526 2 45906315 45907322 PCT