Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01281 ATGGACTCCATTATCGCTTCTTCGCCACTTCAATTTCCCCACCGCCCTCTCTTCACTTCCATTCGGCCCATTCATATCCGAACTCTTATCTCCAATTCCCGCCGAACACCACGAACCCCACTCTCACTCGCTCCCATCGCTTTTACTCCACCAATCACTTCTGCCGCCAAGTCCACCACACTCGCACCCTCTCCGACCGACGACGTTTTCTTGAAGCAACTCGTTCGTGCGCTCTTCTGCTTCGCGGTTGGTTTCTCCGCGCTCGGCGCATTCCGCGCTACTCCTCCCGCACTTGCAATTGCAGTTCCGTGGAATGTATTCGGAACGAGAGGCGCCGAGACAGAGAAAGAGAAAGCGAAGAGTCACAAGTATTCGGACTGTACCGATAAGTTGTTGGAGACGGTGTCGTTTTTGTTGGGAGCCGTAGATGAAGCTAGGAAGGGGAATGGTGACACGAGCGAGGTGGAGGAGGCGTTGAAGGCCGTGAAATTGAAGAAGCAAGAGATGAAGAAAGATATTGACAGGAGGCTCTACCCGGCGTTGAAGAAACTGAGGAACGAAAAGAAGGCGTTGTGGAAACGGTCCGGGGAGATTCTTGGCGATATATTGAAGGCGACGGCGGAGTACGATAGATTGAAGGCGAAGGTGGCGGCAAATGAGAAAGAGAAGGCAAGAATGATGGAGTTGGAGGTGATTGTTGAAGATATGGAGAATGAGTACAATGGGTTATGGGAGAGAGTTGGGGAAATCGAGGACCAGATTTCGAGGGAGGAGACGGTGGCGTTGAGTTATGGGGTGAGGGAAATCAATTTCATAGAGAGAGAGTGTGAACAGCTGGTGGAGAGGTTTAAACAGGAAATTAGGCGCAAGGACTTCGAAAGTTTGCCTACTGGCTCAGTTACCAGGCTCTCAAAAGCTGTCATTCAAAAAGATTTGGAAACTGTGCATAGAAAACATGCTGAACAAATAATTCTTCCTAGCATTTTGGATGTTGAAGATCTTGAACCATTCTTTCACCAAGAGTCTATTTATTTTGCCCAACGTTTGAAAAGAGTTCTTAAAGATTCCAGGGAGAAGCAAAGGAATTTAGAGGCTCAGATAAGAAAGAAAATGAAGAAGTTTGGCAAGGAAAAGCGTAGTATTATTTACTCACCACACGAAGATGTGGTTAAGGGCTTTCCTGAAGTTGAGTTAAAGTGGATGTTTGGAAATAAGGAGGTTGTGCTTCCCAAAGCTGTTGGTCTCCATCTATACCATGGTTGGAAGAAATGGCGTGAAGAAGCTAAGGCAAATTTAAAACAGAATTTGATAAAAGATGCTGAGTTTGGTAGACAATATGTGGCTGAAAGACAGGAACGGATTCTTTTGGACCGCGACAGAGTAGTTTCAAGGACTTGGTATAATGAAGAGAAGAAGAGATGGGAGATTGATCCAGTGGCTGTTCCTTATGCTGTCTCAAAAAAGCTAATAGAATATGTTCGCATTAGGCATGATTGGGGTGCCATGTATATCGAATTAAAGGGGGAGGACAAACAATTTTATGTAGACATAAAGGAATTTGAAATGCTTTTTGAAGATTTGGGGGGATTTGATGGGCTGTATATGAAAATGCTTGCATGTGATATTCCAACAGCTGTTCATCTCATGTGGATTCCTTTCTCTGAATTGAATATTCGCCAACAGCTTCTCTTGATATTAAGAGTGTGTAATGGGATTGTTAGTGGCTTATGGAATTCTAGAATTGTCACACAGGCAAAAAATTGGATCTTTACCCAAATTAAGGATACCACTGATGACATAATGGTGGTGATGGTGTTTCCTATTGTGGAATTTTTAGTCCCATACCCGGTGAGGATACAATTGGGAATGGCTTGGCCAGAGGAAATATACCAGACGGTTGACACCACATGGTACTTGAAATGGCAATCAGAGGCAGAATCAAATTTTAAATCCCGACAATCAACAGACGAAGATGAAGAAAGTTCATGGTCTTTTTGGTTTTTAGTCAGAGCTTCTATATATGGATTTGTTTTGTTTCATGTGGTCAAATTTATGAGGAGAAAACTTCCTAGACTTCTCGGGTTTGGGCCTTTGCGAAGAGATCCAAATAGGCGGAAGTTGCGGCGAGTGAAGTATTACATTGGTCAAAAATTAAAAAAAATCAAGCAGAGGAGAAAGGATGGCGTTGATCCCATAAAGACCGCATTTGAACAGATGAAGAGGGTGAAGAAACCGCCGATACCATTGAAGAACTTTGCTAGCGTCGAGTCTATGAAAGAGGAAATCAATGAAGTTGTGGCATTTTTGCAGAATCCACGGGCATTCCAGGAAATGGGTGCACAGGCGCCTCGGGGTGTTCTTATTGTAGGTGAGAGGGGTACCGGTAAGACATCTCTAGCATTGGCTATTGCTGCTGAGGCTAAGGTGCCCGTTGTTGAAATTAAGGCCCAGCAATTGGAGGCTGGGCTGTGGGTTGGACAAAGTGCCTCCAATGTTCGTGAATTGTTTCAGACAGCAAGAGATCTGGCTCCTGTGATAATATTTGTGGAAGATTTTGATCTGTTTGCTGGTGTACGTGGTACATATATTCATACCAAAAATCAAGACCATGAAACTTTCATCAATCAACTGCTCGTGGAACTTGATGGATTTGAGAAACAAGATGGAGTTGTTTTGATGGCTACAACAAGAAATCTCAAGCAAATTGACGAGGCCTTGCAGAGGCCAGGTCGCATGGATAGAATATTTCATCTTCAAAGACCGACACAAGCTGAGAGAGAAAAAATATTGTACTTGGCAGCAAAGGAAACCATGGATGATCAGCTTATCGATTATGTTGACTGGAAAAAGGTTGCTGAGAAGACAGCTCTTTTACGGCCTATTGAATTAAAAATTGTTCCAATGGCTTTGGAGGGAAGCGCCTTCCGGGGCAAAGTTCTTGACACAGATGAATTGATGGGCTACTGTGGTTTCTTTGCGACTTTCAGCTCTATGGTTCCCTCATGGTTGCGGAAGACCAAAGTTTTCAATAAGTTTAGCAAAGCGATGGTGAATCATCTTGGACTGACATTGACAAAACAAGATCTGCAGAATGTTGTTGATTTGATGGAACCATATGGCCAAATAAGCAATGGGATAGAGTTTTTGAGCCCTCCACTTGATTGGACAAGGGAAACGAAGTTTCCACATGCTGTCTGGGCAGCTGGTCGTGGTCTCACTGCTCTTTTATTACCCAATTTTGATGTTGTTGATAATCTTTGGCTTGAACCTCAATCATGGCAGGGAATTGGATGTACAAAAATCACAAAAGCAAGAAATGAGGGCTCCATCAATGGGAACTCAGAATCAAGATCATATCTCGAAAAGAAGCTTGTATTTTGTTTTGGTTCTTATGTTGCATCCCAAATGTTACTTCCTTTTGGGGAAGAAAACTTACTTTCTATTTCTGAGATACAGCAGGCGCAAGAGATAGCTACTCGAATGGTCATTCAGTATGGGTGGGGACCCGACGACAGTCCTGCAATTTACTACCACAGTAATGCGGTCACGGCATTAAGTATGGGGGATGACCATGAATATGTGATGGCAGCTAAAGTTGAAAAGATGTTTGATTTGGCATATCTCAAAGCAAGAGAAATGCTGCTGAAAAATCGCCCAGTACTAGAAAAGATAGTGGAGGAGTTGCTTGAGTTTGAAATTTTGACTGGGAAGGACTTAGAAAGAATTACTAAAGATAATGGTGTAATCAGGGAGAAAGAGCCATTTACGCTTGGTGAAATCCGAGTTAGTGAGCCAACATCTGTCAGCTTACTTGAAAGAGGAAATGCACCAGGAAGTGCTCTACTAGCATCCTAG 3855 0.4345 MDSIIASSPLQFPHRPLFTSIRPIHIRTLISNSRRTPRTPLSLAPIAFTPPITSAAKSTTLAPSPTDDVFLKQLVRALFCFAVGFSALGAFRATPPALAIAVPWNVFGTRGAETEKEKAKSHKYSDCTDKLLETVSFLLGAVDEARKGNGDTSEVEEALKAVKLKKQEMKKDIDRRLYPALKKLRNEKKALWKRSGEILGDILKATAEYDRLKAKVAANEKEKARMMELEVIVEDMENEYNGLWERVGEIEDQISREETVALSYGVREINFIERECEQLVERFKQEIRRKDFESLPTGSVTRLSKAVIQKDLETVHRKHAEQIILPSILDVEDLEPFFHQESIYFAQRLKRVLKDSREKQRNLEAQIRKKMKKFGKEKRSIIYSPHEDVVKGFPEVELKWMFGNKEVVLPKAVGLHLYHGWKKWREEAKANLKQNLIKDAEFGRQYVAERQERILLDRDRVVSRTWYNEEKKRWEIDPVAVPYAVSKKLIEYVRIRHDWGAMYIELKGEDKQFYVDIKEFEMLFEDLGGFDGLYMKMLACDIPTAVHLMWIPFSELNIRQQLLLILRVCNGIVSGLWNSRIVTQAKNWIFTQIKDTTDDIMVVMVFPIVEFLVPYPVRIQLGMAWPEEIYQTVDTTWYLKWQSEAESNFKSRQSTDEDEESSWSFWFLVRASIYGFVLFHVVKFMRRKLPRLLGFGPLRRDPNRRKLRRVKYYIGQKLKKIKQRRKDGVDPIKTAFEQMKRVKKPPIPLKNFASVESMKEEINEVVAFLQNPRAFQEMGAQAPRGVLIVGERGTGKTSLALAIAAEAKVPVVEIKAQQLEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGTYIHTKNQDHETFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQAEREKILYLAAKETMDDQLIDYVDWKKVAEKTALLRPIELKIVPMALEGSAFRGKVLDTDELMGYCGFFATFSSMVPSWLRKTKVFNKFSKAMVNHLGLTLTKQDLQNVVDLMEPYGQISNGIEFLSPPLDWTRETKFPHAVWAAGRGLTALLLPNFDVVDNLWLEPQSWQGIGCTKITKARNEGSINGNSESRSYLEKKLVFCFGSYVASQMLLPFGEENLLSISEIQQAQEIATRMVIQYGWGPDDSPAIYYHSNAVTALSMGDDHEYVMAAKVEKMFDLAYLKAREMLLKNRPVLEKIVEELLEFEILTGKDLERITKDNGVIREKEPFTLGEIRVSEPTSVSLLERGNAPGSALLAS 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01281 1284 Coils Coil 346 373 - -
Vian3g01281 1284 Gene3D Peptidase M41 1054 1252 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vian3g01281 1284 SUPERFAMILY FtsH protease domain-like 1056 1253 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vian3g01281 1284 Pfam ATPase family associated with various cellular activities (AAA) 786 919 IPR003959 GO:0005524|GO:0016887
Vian3g01281 1284 Coils Coil 202 239 - -
Vian3g01281 1284 FunFam ATP-dependent zinc metalloprotease FtsH 3 728 939 - -
Vian3g01281 1284 Coils Coil 152 172 - -
Vian3g01281 1284 PANTHER METALLOPROTEASE M41 FTSH 356 1245 - -
Vian3g01281 1284 Gene3D - 728 939 IPR027417 -
Vian3g01281 1284 SMART AAA_5 782 922 IPR003593 GO:0016887
Vian3g01281 1284 FunFam ATP-dependent zinc metalloprotease FtsH 3 1054 1251 - -
Vian3g01281 1284 Pfam Peptidase family M41 1068 1242 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vian3g01281 1284 Coils Coil 269 289 - -
Vian3g01281 1284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 954 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01281 Vian-Chr3 14164287 14192405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01281 747 955 Miscellaneous Gene Families AT3G47060 41.038 1.38e-38 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01281 - - gmx:100794385 2209.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01281 3 14164287 14192405 Vian3g01281 3 14164287 14192405 ECH