Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01179 ATGTTCTACCACCTCAAAACAGTATGCCTCATATGTTTCCTTTTACTATCCTTTCAAGTTTCACTGTGGTCATGTGCTTCACTCCCAAACTTGGCTTCTTGCTTGCTTAATCACAACATCAAAAACTTTACCACGCTCCCTTATAAAGAACACGACCAATCCTCTTCCTATAATTACTTCAAAATTCTTAATTTTTCCATCCAAAACCTTCGGTTCACAGAGCCCGTGATTCCCAAGCCAATGGCCATTGTATTGCCGGAGAGTTTGGAGCAGCTGCAGAAAAGTGTAGGATGCAGTAGAGAGAGTTCTATGGAAATCAGAGTAAGATGTGGCGGACACAGCTATGAAGGGACTTCGTATGTGGCTGATGAAGGCACTCCTTTTGTGATCATTGACATGATGAATTTGAACCATGTTTGGGTGGACATGGAGACAGAAACAGCATGGGTTGAAGGTGGTGCAACGTTGGGAGAGACTTATTATGCAATCTCTGAAGCAAGCAACGAGCATGGATTCTCAGCTGGGTCATGTCCAACTGTTGGCGTCGGAGGACACATTGGAGGTGGTGGTTTTGGGATGCTGTCTAGAAAATATGGACTTGCAGCGGACAACGTGGTGGATGCCCTACTTGTCGATGCTGATCAAAATTTGTTGGACCGTGAAACCATGGGAGAAGATGTGTTCTGGGCTATTAGAGGAGGAGGAGGTGGTCTTTGGGGGATCATCTATGCCTGGAAAATCCAGTTGCTGAAAGTGCCACAGGTTGTAACCAGTTTCACCGTATCAAGAACAGGCACAAAAAGTGATGTTGCCAATCTGGTGCACAAATGGCAATATGTGGCACCAAACTTGGAAGATGACTACTATCTGTCATGCTTTGTTGGAGCTGGTTTGCCACAAGCTAAAACCAAAGGGTTATCAGTAACACTCAATGGTTTCTATCTTGGTCATAGAAGCAGTGCTGTATCCATTCTAAACGAGACTTTTCCGGAGTTGGGTGTTACAGAAGAAGAATGCATAGAAATGAGTTGGATTGAGTCTACTGTTTTCTTCTCTGGCCTAAGTGATGGAGCTTCGGTGTCTGACTTGAAGAACAGGTATCTGCAAGAAAAAGAATATTTCAAGGCGAAATCAGATTATGTAAGAAAGCACGTTCCTCTTGTGGGGATAGAAACTGCACTGGACATCCTTGAAAAGGAACCAAAGGGATATGTTATTCTGGATGCTTATGGTGGAAAGATGCATAATATAAGCAATGATGCAATTGCTTTTCCCCACAGAAGAGGAAATCTGTTTACAATACAGTACCTGATATATTGGAAAGAAGGTGAGAATGAGAAAAGCAGTGATTATGTAGATTGGATAAGAGGATTCTATGATGCTATGACTCCCTTTGTTTCATGGGGTCCAAGAGCTGCATATATTAATTACATGGACTTTGACCTTGGAGTGAGGAAGAGGATAAGTAATTGTGGTAATGTGAAAGATGGTGCGGAAAGTGCAAGAGATTGGGGTGAAAAGTACTTCTTGAGTAACTACGACAGATTGGTGAGAGCAAAGACCATGATTGATCCTAACAACGTTTTCACCAATGAACAGGGCATTCCTCCTATGTCGTCAAAGCACAGAGCAAACAAATGA 1641 0.4278 MFYHLKTVCLICFLLLSFQVSLWSCASLPNLASCLLNHNIKNFTTLPYKEHDQSSSYNYFKILNFSIQNLRFTEPVIPKPMAIVLPESLEQLQKSVGCSRESSMEIRVRCGGHSYEGTSYVADEGTPFVIIDMMNLNHVWVDMETETAWVEGGATLGETYYAISEASNEHGFSAGSCPTVGVGGHIGGGGFGMLSRKYGLAADNVVDALLVDADQNLLDRETMGEDVFWAIRGGGGGLWGIIYAWKIQLLKVPQVVTSFTVSRTGTKSDVANLVHKWQYVAPNLEDDYYLSCFVGAGLPQAKTKGLSVTLNGFYLGHRSSAVSILNETFPELGVTEEECIEMSWIESTVFFSGLSDGASVSDLKNRYLQEKEYFKAKSDYVRKHVPLVGIETALDILEKEPKGYVILDAYGGKMHNISNDAIAFPHRRGNLFTIQYLIYWKEGENEKSSDYVDWIRGFYDAMTPFVSWGPRAAYINYMDFDLGVRKRISNCGNVKDGAESARDWGEKYFLSNYDRLVRAKTMIDPNNVFTNEQGIPPMSSKHRANK 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01179 546 Pfam Berberine and berberine like 473 536 IPR012951 GO:0016491|GO:0050660
Vian3g01179 546 Gene3D - 30 136 IPR016167 -
Vian3g01179 546 Gene3D - 255 469 - -
Vian3g01179 546 Gene3D - 141 537 IPR016169 -
Vian3g01179 546 Pfam FAD binding domain 80 217 IPR006094 GO:0050660
Vian3g01179 546 SUPERFAMILY FAD-binding/transporter-associated domain-like 68 253 IPR036318 GO:0050660
Vian3g01179 546 ProSiteProfiles PCMH-type FAD-binding domain profile. 76 252 IPR016166 GO:0071949
Vian3g01179 546 PANTHER OS08G0158400 PROTEIN 30 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01179 Vian-Chr3 13090245 13091885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01179 30 536 Miscellaneous Gene Families AT1G30760 41.879 3.46e-131 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01179 - - vun:114190730 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01179 3 13090245 13091885 Vian3g01179 3 13090245 13091885 ECH