Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00707 ATGTTGAGAATAGGAAAGTTGAATCATGTGGAGGCGAGGGTGTCTTTGATAGAGCAATGGATTTTCCTCCGAAGATTGTCTCTGTGGTCGATGAAGAAGGAAGCAGAGTTAGAATCGGCACTCTCACGCAATCGACGATGGGTAGTTAACAACCAGATAAAGAACATCATCCTCCGCTACCCCAACAACGAAATCCCCATCGAAACCCTTCAGAAGAAGTTCAAAACCCTCGATCTGCAAGGAAAAGCCCTCAACTGGCTCTCTAAGTACCCATGCTGCTTCCAAATCCACGATAACCGCTGCCGCCTCACCAAACGCATGATGAACCTCGTCGCACAGGAACACTCCCTCATCGACTCCCTCCAATCCCTCTTCGCTCGCCGCTTGGCCAAACTTCTCATGCTAACTGCCCGCAACAGACTCACCGCCCTCAAAATCAACGAATTCAAACGCGCGTTCGGCTTCCCCGATGATTACGTAATCAGGATACTGCCCAACTACCCTAATTTGTTCCGTATCGTCAACGAGAGCGGCAGGAGGAACTCCATGGCCATTGAGTTGCTGCATTGGGACCCTGACCTCGCAGTCTCCGCCGTCGAATCCTCCGCTGCGAAGCACGGTACGCCGCCACATTTTTCATGTTCTTTGCCGTCTAGTTGGGTGAAATCCTGGGAGAGATTTCGCGAATTTGACGAAACTCCTTACATTTCGCCGTATTCGGATCCTCGAGGTTTGGTGGAGGGGTCCAAGGAGATGGAGAAGAGGAATGTTGGTTTGGTGCATGAGTTGTTGTCTTTGACTCTTTGGAAGAAGGCTTCAATTGTGAAGTTGGGGCATTTTAGGAGGGAGTTCCTTTTGCCTGATAGGTTGAATGTGTTGTTGCTCAAGCACCCTGGGATTTTCTATGTTTCCAATAAGTATAAGATTTACACTGTGCTTCTTAGGGAGGCCTATGTCGGGTCTCAGCTTGTGGATAAGGATCCTTTGGTCGTTATGAAGGAGAAGTTTGGGGAGTTGATGGAGGAGGGGCTTCATGAATACAATCAGAGGCGTCGCCTCCTCAATGTGGAAAAGAGGAGGAAGTTAGGGGTTCCATTGATTAGTGTAGATGGTGCAAAGGGTAGAAGGAGAAGTCACGAAGTTGATGATGATGGTGGTGATAGTAACGGTGGAGATAGTAAGGTGGGAGGGTTATTTGACCCTGAAGAAAGAAAACGGTTTTATAGAGTTCTCTTTGATGATGATGTTTCTTGA 1254 0.4825 MLRIGKLNHVEARVSLIEQWIFLRRLSLWSMKKEAELESALSRNRRWVVNNQIKNIILRYPNNEIPIETLQKKFKTLDLQGKALNWLSKYPCCFQIHDNRCRLTKRMMNLVAQEHSLIDSLQSLFARRLAKLLMLTARNRLTALKINEFKRAFGFPDDYVIRILPNYPNLFRIVNESGRRNSMAIELLHWDPDLAVSAVESSAAKHGTPPHFSCSLPSSWVKSWERFREFDETPYISPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKASIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVGSQLVDKDPLVVMKEKFGELMEEGLHEYNQRRRLLNVEKRRKLGVPLISVDGAKGRRRSHEVDDDGGDSNGGDSKVGGLFDPEERKRFYRVLFDDDVS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00707 417 Pfam Plant organelle RNA recognition domain 32 343 IPR021099 GO:0003723
Vian3g00707 417 MobiDBLite consensus disorder prediction 373 389 - -
Vian3g00707 417 MobiDBLite consensus disorder prediction 373 399 - -
Vian3g00707 417 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 26 363 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00707 Vian-Chr3 7366780 7368033 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00707 - - pvu:PHAVU_007G079300g 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00707 3 7366780 7368033 Vian3g00707 3 7366780 7368033 ECH