Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00641 ATGGAATCCCTTTGGAAACTCTTGTATTTGCTCGAGCCTGCACCTGTGACACTTATCACTACAGCAGTGGCTGTGACATTCGGATCTGCGTTTCGAGCTCTAAATTATGGCAAGGAAATGGAGCGTAATCGTGACTTATCCGAAGCATCCATTACATTGGATAGGTCACAAGCCCTGATGATCCCTGTCATGAGCTCTTTTAGCTTGCTTTTGATGTTCTACTTGTTCTCATCTGTCTCGCAGCTTCTCACTGCATTCACTGCCATTGCGTCCGCTTCTTCCCTTTTCTTCTGTTTGTCTCCTTATGTTGCCTATCTAAAGACACAGTTTGGTTTAGCTGATCCATTTGTTTCACGTTGTTGCTCAAAATCTTTTACACGACTCCAAGCTATACTGTTGGTAGTTTGCTCTTTCATAGTCGCGTCTTGGCTTGTTTCTGGTCATTGGATACTGAATAATTTATTGGGCATATCTATATGCATTGCATTTGTAAGCCATGTGCGTCTCCCAAACATCAAGATTTGTGCAATGCTCCTTCTTTGTCTATTCGTATATGACATTTTTTGGGTTTTCTTCTCCGAAAGATTTTTTGGTGCAAATGTCATGGTATCAGTAGCAACGCAGCAAGCATCAAATCCCGTGCACACAGTTGCTAATAGTTTAAGCCTTCCTGGGTTGCAACTAATAACTAAGAAGTTAGAGTTGCCTGTAAAGATTGTTTTTCCAAGAAATTTGCTGGGCGGTGTTGTTCCTGGAGAGAATGCGACAGACTTCATGATGCTTGGTTTAGGAGACATGGCTATCCCAGGAATGCTCCTGGCTTTAGTCCTCTGCTTTGATTATCGCAAGAGCAGGGACATTGTAAATCTCTTTGAGTTACATTCCTCAAAGGGGCACAAGTACATATGGTATGCACTACCTGGGTATGCCATTGGTTTGATTACTGCTTTGGCTGCTGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGGTGCCTTCTACTTTGGGACCTGTGATTGTGATCTCTTGGATGAAAAGAGAATTACTTGAGCTGTGGGAAGGAAACATGCCGAATTTCAATGATAAGGATCGCGAAATAGAAACAGCGGCGCACGGGGGACGACAGCATACAGTGGACGACAGCACAAAGTGGATTCAACGGCTTGACGGCAGCGGTGGTACAGGCAGCGAAGAAGAATCAAGCTCTGCCATGCTTGCATTTTCGAGAGGCTTTGTTTCCCGTTTGCAGCGCTTTGCCGTCAATTCACCCTCATCACTCCGATTTCTTAGTTCTGATGCAGAGATTCAGACTCGGATTATTGATCCAAAACCTGGTTTGATGACCCCTGATTCCAAGCGAACTGGGCTTATAGCGGTAAAATGTGGAATGAGTGCGCTTTGGGATAAATGGGGTGCTAGAATCCCAATCACTGTGCTTTGGGTGGATGATAACATTGTGTCTCAGGTTAAGACCCCAGAGAAAGAAGGTTTTTGTTCTCTCCAGGTTCACCTGAGTAACATTAAGTTTGTACAGAATGGTAACAACCATATGTCTGTGGTTCACTTTTCCCCGGATTTGCATAAGCAACAACTTTATGGACTTGTGATTGGTTGTGGACATAAGAAGGAAAAACATTTGACCAAGCCTGAAGTTGGTCATTTTAGGGCGCAAGGAGTTCCAATGAAGAGAAAGCTTAAGGAGTTTCCAGTGACAGAGGATGCACTTCTTCCTGTTGGAGCATCACTTAATGTTCGCCATTTTGTTCCCGGCCAGTATGTTGATGTCACTGGAATAACCAAAGGAAAAGGTTTTCAGGGTGTGATGAAGCGGCATGGATTTAAGGGAGGTCCAGCATCCCATGGTGCTTCATTGTCCCATCGAAGCGCTGGTTCTGTTGGTCATATAACTGGTCCGGGAAGGGTCCCAGGAGCTACAGGGAACTTTGTTTTTATAAAAGATGCTGTATACAAAAAACCTGACATATCTCTGCTTCCTTTCCCAACTTACTTTGCCCCAGAAGACGAAGATACTGATGATTTGAAACCATTGGTTGCGGAGCTAGGGGATGTGGATCCGTTTATCGTTACTGATTAA 2103 0.4422 MESLWKLLYLLEPAPVTLITTAVAVTFGSAFRALNYGKEMERNRDLSEASITLDRSQALMIPVMSSFSLLLMFYLFSSVSQLLTAFTAIASASSLFFCLSPYVAYLKTQFGLADPFVSRCCSKSFTRLQAILLVVCSFIVASWLVSGHWILNNLLGISICIAFVSHVRLPNIKICAMLLLCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLLGGVVPGENATDFMMLGLGDMAIPGMLLALVLCFDYRKSRDIVNLFELHSSKGHKYIWYALPGYAIGLITALAAGVLTHSPQPALLYLVPSTLGPVIVISWMKRELLELWEGNMPNFNDKDREIETAAHGGRQHTVDDSTKWIQRLDGSGGTGSEEESSSAMLAFSRGFVSRLQRFAVNSPSSLRFLSSDAEIQTRIIDPKPGLMTPDSKRTGLIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTPEKEGFCSLQVHLSNIKFVQNGNNHMSVVHFSPDLHKQQLYGLVIGCGHKKEKHLTKPEVGHFRAQGVPMKRKLKEFPVTEDALLPVGASLNVRHFVPGQYVDVTGITKGKGFQGVMKRHGFKGGPASHGASLSHRSAGSVGHITGPGRVPGATGNFVFIKDAVYKKPDISLLPFPTYFAPEDEDTDDLKPLVAELGDVDPFIVTD 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00641 700 FunFam 50S ribosomal protein L3 534 585 - -
Vian3g00641 700 Pfam Signal peptide peptidase 49 358 IPR007369 GO:0004190|GO:0016020
Vian3g00641 700 ProSitePatterns Ribosomal protein L3 signature. 590 613 IPR019926 -
Vian3g00641 700 Gene3D Translation factors 431 523 - -
Vian3g00641 700 Gene3D Ribosomal protein L3, domain 3 585 648 IPR044892 -
Vian3g00641 700 SUPERFAMILY Translation proteins 456 659 IPR009000 -
Vian3g00641 700 PANTHER 50S RIBOSOMAL PROTEIN L3 642 698 IPR019927 GO:0003735|GO:0005840|GO:0006412
Vian3g00641 700 Pfam Ribosomal protein L3 588 644 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vian3g00641 700 Gene3D - 529 584 - -
Vian3g00641 700 SMART psh_8 49 348 IPR006639 GO:0004190|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00641 Vian-Chr3 6519429 6532981 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00641 K09598 - gmx:100794976 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00641 3 6519429 6532981 Vian3g00641 3 6519429 6532981 ECH