Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00636 ATGGCTACACAGTTCGGCATCAAATTGGCCGTCCACCTCATCACCAACCACTTCGGCAATCTCGTCGCTAAAGTATGCGAAAATCTATTTAGTCATGGAGCCCTCACTTTGGATCAATTGGTTCGCTACTCGGAGCTTACTAAGGACCAAGTTAAGAACTCCCTACTCGTCTTAGTTCAACACAATTGTTGCCAAGCATTTGTTTCTGCTCCTGAAGATGACGATGATGATGTAGACAGATTGAGAGTTAGGACTCAGTACTTGGTGTTGTTTGATAACATAATCCACCGATTGAGATTTTCCAAATTCTTGGAGACTGTGTCGCGGAAGCTTGATGAAGAATGTGTGGAACTTCTTGATGGTTTGCTTCGCGATGGTAGGCTTACCCTGAAACAAATGGTTGACAGAGCAAGTCAAGGGAAAGAAAATGCCGTGGATACAAAAGTTGTACGAGAGATACTGAATAAGCTTTTAACAGCTCGACTTGTCGAACGCTGCCCTGTCCCTGAGCCAGTTGTTTCTACCTCATTTAAAGAAACTACTACTAGGAAGCGGGGTGCTAAGTCTGCCAAGATATTTGAAGCACCTGAGACATTACAGCAACGTGTTGTAGAAGCAGCAGTGCCTGGGGATGCAATCAGATTTTCATTCACTGCGGATATGAAATCTAATGTTGACAGGGAAACAAATTCAGATGATGATGAAATTGGTAGCGTTCAACAGAATGATGAAAAAGAGGAGGAAATTCTTTGGCGTGCCAATTTTGAGGAGTTTATTCGTCATCTTAGACATAAGGCATTGATTGAGAATATAAGAACTCAGCATGATGATGGAACTGCTACTGTCTTAAGTGCAGTATTGGAGGCAACAAAAACTGTTGAGAAAAAAGTGAAAATGGAGAATTCAGTTCCCCTGTCACTGGATACAATTACCGCAGAGGTCATGAAGACTGATACAGGACGAACGATGACTATAGATCGTATCAGAGCTTCTCTTAGCCAGTTGGGCTGTTCACAGAGGATGATTGTAGATGATGCATATAGTATTGATTTGAAGAAAATTATTGAACGGGCTCAAAATGAAGAGGTTGAGTCAATTGTGTTGAAAAGGTATGGAAGGGATGCGTACAGAATGTTCAGGCTACTGTCAAAGGATGGTTGTTTTCATGACACAGATCAGATAGCAGCATCTACTCTGGTTGAGAAAAAGGAGGCTCCAAAGTTGCTATATAGGTTATGGAAGGACAATTACTTGTATATGGAGAAAGTAGTTGCGACGGGAGTGAAGCAAACAACTATTTTGATGTGGAAAGTCAGTAAACCTCTGCTTTGGGAACATGTACTGGATGAGATGTACCACGCTGCCTTAAATTTGAGCCTAAGAATGGCTTTTGAGCAGGAAAAGGATGAAGAGCTTTTGAATGTTCCTAAAGACAAGCTTAAGGAGCCAGGGCCACTGCAGAAGAAATACAAACGGCTACTAAATGTCTGGTTACTCCTGGGGTCATCATTGACGAAGCTCGATGAAGCTCTCATGCTTTTCCATGATTTCTGA 1554 0.4208 MATQFGIKLAVHLITNHFGNLVAKVCENLFSHGALTLDQLVRYSELTKDQVKNSLLVLVQHNCCQAFVSAPEDDDDDVDRLRVRTQYLVLFDNIIHRLRFSKFLETVSRKLDEECVELLDGLLRDGRLTLKQMVDRASQGKENAVDTKVVREILNKLLTARLVERCPVPEPVVSTSFKETTTRKRGAKSAKIFEAPETLQQRVVEAAVPGDAIRFSFTADMKSNVDRETNSDDDEIGSVQQNDEKEEEILWRANFEEFIRHLRHKALIENIRTQHDDGTATVLSAVLEATKTVEKKVKMENSVPLSLDTITAEVMKTDTGRTMTIDRIRASLSQLGCSQRMIVDDAYSIDLKKIIERAQNEEVESIVLKRYGRDAYRMFRLLSKDGCFHDTDQIAASTLVEKKEAPKLLYRLWKDNYLYMEKVVATGVKQTTILMWKVSKPLLWEHVLDEMYHAALNLSLRMAFEQEKDEELLNVPKDKLKEPGPLQKKYKRLLNVWLLLGSSLTKLDEALMLFHDF 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00636 517 Pfam RNA polymerase III subunit RPC82 153 329 IPR008806 GO:0003677|GO:0006351
Vian3g00636 517 Gene3D - 91 175 IPR036388 -
Vian3g00636 517 Gene3D - 254 348 IPR036388 -
Vian3g00636 517 Gene3D - 351 439 IPR036388 -
Vian3g00636 517 FunFam RNA polymerase III subunit, putative 352 439 - -
Vian3g00636 517 FunFam RNA polymerase III subunit RPC82 family protein 254 348 - -
Vian3g00636 517 Gene3D - 2 73 IPR036388 -
Vian3g00636 517 FunFam DNA-directed RNA polymerase III subunit RPC3 2 89 - -
Vian3g00636 517 FunFam DNA-directed RNA polymerase III subunit rpc3 91 174 - -
Vian3g00636 517 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 3 517 IPR039748 GO:0003697|GO:0005666
Vian3g00636 517 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 8 68 IPR013197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00636 Vian-Chr3 6419640 6426835 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00636 K03023 - gmx:100784750 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00636 3 6419640 6426835 Vian3g00636 3 6419640 6426835 ECH