Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00632 ATGCGTGAGATTCTTCATATCCAGGGTGGGCAATGCGGGAACCAGATCGGAGCGAAGTTCTGGGAGGTGGTGTGCGCGGAGCACGGGATTGATTCGACGGGAAGGTACCAGGGGAACAATGAGTTGCAACTGGAGCGAGTGAATGTGTACTACAATGAGGCGAGTTGCGGGAGATTTGTCCCTAGGGCGGTGCTCATGGATCTGGAGCCAGGGACCATGGACAGCGTCAGATCTGGACCATACGGCCAGATTTTCCGCCCGGATAACTTCGTCTTCGGACAGTCCGGCGCCGGAAACAACTGGGCCAAGGGTCACTATACTGAGGGGGCTGAGTTAATTGACTCCGTTCTTGATGTTGTTAGGAAGGAGGCGGAAAACTGTGACTGCCTTCAAGTGCTGTTGTATGCTTCGGAGTTAAAATCGGTGGTTTCTGATTTCAAACTGAGGAGTGAAGCTACTGTGTATGTCTGCCACTCTCTCGGTGGTGGAACTGGTTCTGGAATGGGAACACTTTTGATCTCGAAGATCAGGGAAGAGTACCCTGATCGAATGATGCTCACATTTTCCGTGTTCCCATCCCCTAAGGTTTCTGACACTGTTGTTGAGCCATACAATGCAACTCTATCAGTACACCAACTCGTTGAGAATGCAGACGAATGCATGGTTTTGGACAACGAAGCTCTCTATGACATCTGCTTCCGTACCCTTAAGCTCACCACTCCAAGCTGTGAGTTCATTTCATATTCTGTTTGCTGTGGTTATTTTGTGTTGTGTTACATAAAGATTATCGCATCCACTGTTTGTGATATCCCCCCAACTGGGCTCAAGATGGCATCAACCTTTATTGGGAATTCTACATCTATCCAGGAAATGTTCAGGAGGGTGAGTGAGCAATTCACGGCTATGTTCCGCAGAAAGGCTTTCTTGCACTGGTACACCGGCGAGGGTATGGATGAAATGGAGTTTACTGAGGCTGAGAGCAACATGAATGACCTTGTCTCGGAGTACCAGCAGTACCAAGATGCAACTGCGGATGATGATGGTTATGAATATGAAGACGAAGAGGATGTTCAGGAAGACGAGGAATCTTGA 1092 0.4881 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNNELQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQVLLYASELKSVVSDFKLRSEATVYVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSCEFISYSVCCGYFVLCYIKIIASTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDDGYEYEDEEDVQEDEES 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00632 363 Coils Coil 322 342 - -
Vian3g00632 363 Gene3D Helix hairpin bin 288 344 IPR023123 -
Vian3g00632 363 SMART Tubulin_4 47 267 IPR003008 GO:0005525
Vian3g00632 363 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian3g00632 363 PRINTS Beta-tubulin signature 88 99 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian3g00632 363 PRINTS Beta-tubulin signature 108 126 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian3g00632 363 SUPERFAMILY Tubulin C-terminal domain-like 262 340 IPR008280 -
Vian3g00632 363 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Vian3g00632 363 FunFam Tubulin beta chain 1 249 - -
Vian3g00632 363 Gene3D Tubulin/FtsZ, GTPase domain 1 252 IPR036525 -
Vian3g00632 363 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 249 IPR036525 -
Vian3g00632 363 MobiDBLite consensus disorder prediction 343 363 - -
Vian3g00632 363 Pfam Tubulin/FtsZ family, GTPase domain 153 232 IPR003008 GO:0005525
Vian3g00632 363 Pfam Tubulin/FtsZ family, GTPase domain 3 134 IPR003008 GO:0005525
Vian3g00632 363 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 161 167 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vian3g00632 363 PANTHER TUBULIN 3 243 IPR000217 GO:0005874|GO:0007017
Vian3g00632 363 CDD beta_tubulin 2 340 - -
Vian3g00632 363 FunFam Tubulin beta chain 288 349 - -
Vian3g00632 363 PRINTS Tubulin signature 172 193 IPR000217 GO:0005874|GO:0007017
Vian3g00632 363 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Vian3g00632 363 PRINTS Tubulin signature 153 171 IPR000217 GO:0005874|GO:0007017
Vian3g00632 363 PRINTS Tubulin signature 211 231 IPR000217 GO:0005874|GO:0007017
Vian3g00632 363 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Vian3g00632 363 PRINTS Tubulin signature 197 210 IPR000217 GO:0005874|GO:0007017
Vian3g00632 363 MobiDBLite consensus disorder prediction 345 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00632 Vian-Chr3 6376896 6378866 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00632 K07375 - pdam:113675629 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00632 3 6376896 6378866 Vian3g00632 3 6376896 6378866 ECH